RNA–Protein interactions for RNA: YPR029C

APL4, Transcript of Gamma-adaptin, yeast

Gene APL4, Length 2,499 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
APL4	YPR029C	YND1	P40009	630 aa		3	□□□□□ -1.93
APL4	YPR029C	DAN1	P47178	298 aa		3	□□□□□ -1.93
APL4	YPR029C	YDR102C	Q03864	110 aa		3	□□□□□ -1.93
APL4	YPR029C	YDR415C	Q04033	374 aa	Predicted RBP	3	□□□□□ -1.93
APL4	YPR029C	GAL83	Q04739	417 aa		3	□□□□□ -1.93
APL4	YPR029C	UTP10	P42945	1769 aa	Known RBP	3	□□□□□ -1.93
APL4	YPR029C	YRF1-3	P0CX14	1859 aa		3	□□□□□ -1.93
APL4	YPR029C	YRF1-7	P0CX15	1859 aa		3	□□□□□ -1.93
APL4	YPR029C	YRF1-6	P53819	1859 aa		3	□□□□□ -1.93
APL4	YPR029C	TY2B-LR1	P0C2J3	1770 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TY2B-F	P0CX63	1770 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TY2B-GR2	P0CX64	1770 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TY2B-C	P25384	1770 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TY2B-DR2	Q03494	1770 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TY2B-DR3	Q07791	1770 aa	Known RBP	2.99	□□□□□ -1.93
APL4	YPR029C	TY2B-OR1	Q12113	1770 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TY2B-DR1	Q12472	1770 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TY2B-B	Q12491	1770 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TY2B-OR2	Q12501	1770 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TRP1	P00912	224 aa		2.99	□□□□□ -1.93
APL4	YPR029C	ATP15	P21306	62 aa		2.99	□□□□□ -1.93
APL4	YPR029C	VTC1	P40046	129 aa	RIP-Chip data	2.99	□□□□□ -1.93	not detected
APL4	YPR029C	NSA2	P40078	261 aa	Known RBP	2.99	□□□□□ -1.93
APL4	YPR029C	NCA3	P46955	337 aa		2.99	□□□□□ -1.93
APL4	YPR029C	RAF1	Q06891	181 aa		2.99	□□□□□ -1.93
APL4	YPR029C	RPO21	P04050	1733 aa	Known RBP	2.99	□□□□□ -1.93
APL4	YPR029C	CHC1	P22137	1653 aa	Known RBP	2.99	□□□□□ -1.93
APL4	YPR029C	DOP1	Q03921	1698 aa		2.99	□□□□□ -1.93
APL4	YPR029C	YAR023C	D6VPM8	179 aa		2.99	□□□□□ -1.93
APL4	YPR029C	ECM12	O13529	151 aa		2.99	□□□□□ -1.93
APL4	YPR029C	TOD6	P34219	525 aa		2.99	□□□□□ -1.93
APL4	YPR029C	YER135C	P40082	130 aa		2.99	□□□□□ -1.93
APL4	YPR029C	YMR082C	Q04276	118 aa		2.99	□□□□□ -1.93
APL4	YPR029C	SMT3	Q12306	101 aa	Known RBP	2.99	□□□□□ -1.93
APL4	YPR029C	KSH1	Q8TGJ3	72 aa		2.99	□□□□□ -1.93
APL4	YPR029C	BPT1	P14772	1559 aa		2.99	□□□□□ -1.93
APL4	YPR029C	RPA190	P10964	1664 aa	Known RBP	2.98	□□□□□ -1.93
APL4	YPR029C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	2.98	□□□□□ -1.93	not detected
APL4	YPR029C	YET1	P35723	206 aa		2.98	□□□□□ -1.93
APL4	YPR029C	MRPL11	P36521	249 aa	Predicted RBP	2.98	□□□□□ -1.93
APL4	YPR029C	MRPS8	Q03799	155 aa		2.98	□□□□□ -1.93
APL4	YPR029C	COA6	Q3E846	104 aa		2.98	□□□□□ -1.93
APL4	YPR029C	NAG1	Q8TGN9	163 aa		2.98	□□□□□ -1.93
APL4	YPR029C	DNF1	P32660	1571 aa		2.98	□□□□□ -1.93
APL4	YPR029C	LSM2	P38203	95 aa	Known RBP	2.98	□□□□□ -1.93
APL4	YPR029C	YEL028W	P39989	153 aa		2.98	□□□□□ -1.93
APL4	YPR029C	CCH1	P50077	2039 aa		2.98	□□□□□ -1.93
APL4	YPR029C	SCW4	P53334	386 aa	Known RBP	2.98	□□□□□ -1.93
APL4	YPR029C	YDR215C	Q12240	137 aa		2.98	□□□□□ -1.93
APL4	YPR029C	ATG5	Q12380	294 aa		2.98	□□□□□ -1.93
APL4	YPR029C	ODC2	Q99297	307 aa		2.98	□□□□□ -1.93
APL4	YPR029C	TY1B-NL2	Q99337	1749 aa	Known RBP	2.97	□□□□□ -1.93
APL4	YPR029C	YFR010W-A	P0C5N0	62 aa		2.97	□□□□□ -1.93
APL4	YPR029C	UBC4	P15731	148 aa		2.97	□□□□□ -1.93
APL4	YPR029C	ARC15	P40518	154 aa	RIP-Chip data	2.97	□□□□□ -1.93	not detected
APL4	YPR029C	YNR064C	P53750	290 aa		2.97	□□□□□ -1.93
APL4	YPR029C	RPL21B	Q12672	160 aa	Known RBP	2.97	□□□□□ -1.93
APL4	YPR029C	MDH2	P22133	377 aa		2.97	□□□□□ -1.93
APL4	YPR029C	YBR013C	P38215	129 aa		2.97	□□□□□ -1.93
APL4	YPR029C	FLX1	P40464	311 aa		2.97	□□□□□ -1.93
APL4	YPR029C	MSL1	P40567	111 aa	Predicted RBP	2.97	□□□□□ -1.93
APL4	YPR029C	ATO3	Q12359	275 aa		2.97	□□□□□ -1.93
APL4	YPR029C	ULS1	Q08562	1619 aa		2.97	□□□□□ -1.93
APL4	YPR029C	NTE1	Q04958	1679 aa		2.96	□□□□□ -1.93
APL4	YPR029C	USO1	P25386	1790 aa		2.96	□□□□□ -1.93
APL4	YPR029C	INO4	P13902	151 aa		2.96	□□□□□ -1.94
APL4	YPR029C	FUN14	P18411	198 aa		2.96	□□□□□ -1.94
APL4	YPR029C	UMP1	P38293	148 aa		2.96	□□□□□ -1.94
APL4	YPR029C	DIM1	P41819	318 aa	Known RBP	2.96	□□□□□ -1.94
APL4	YPR029C	YJR085C	P47131	105 aa	Known RBP	2.96	□□□□□ -1.94
APL4	YPR029C	DSK2	P48510	373 aa		2.96	□□□□□ -1.94
APL4	YPR029C	HAL1	Q01766	294 aa		2.96	□□□□□ -1.94
APL4	YPR029C	YOR376W-A	Q3E805	51 aa		2.96	□□□□□ -1.94
APL4	YPR029C	YAL064W	P39711	94 aa		2.96	□□□□□ -1.94
APL4	YPR029C	YFL067W	P43537	175 aa		2.96	□□□□□ -1.94
APL4	YPR029C	YFR035C	P43608	114 aa		2.96	□□□□□ -1.94
APL4	YPR029C	UPS3	Q04006	179 aa		2.96	□□□□□ -1.94
APL4	YPR029C	YLR281C	Q05863	155 aa		2.96	□□□□□ -1.94
APL4	YPR029C	PAI3	P01094	68 aa		2.95	□□□□□ -1.94
APL4	YPR029C	PHO88	P38264	188 aa	Predicted RBP	2.95	□□□□□ -1.94
APL4	YPR029C	SPO73	P40031	143 aa		2.95	□□□□□ -1.94
APL4	YPR029C	TDA2	P40045	126 aa		2.95	□□□□□ -1.94
APL4	YPR029C	EMC5	P40540	141 aa		2.95	□□□□□ -1.94
APL4	YPR029C	CRH1	P53301	507 aa		2.95	□□□□□ -1.94
APL4	YPR029C	LIP1	Q03579	150 aa		2.95	□□□□□ -1.94
APL4	YPR029C	FYV12	Q08559	129 aa		2.95	□□□□□ -1.94
APL4	YPR029C	YOS1	Q3E834	85 aa		2.95	□□□□□ -1.94
APL4	YPR029C	TIM9	O74700	87 aa		2.95	□□□□□ -1.94
APL4	YPR029C	CYB5	P40312	120 aa		2.95	□□□□□ -1.94
APL4	YPR029C	ERG25	P53045	309 aa		2.95	□□□□□ -1.94
APL4	YPR029C	ATP19	P81451	68 aa		2.95	□□□□□ -1.94
APL4	YPR029C	RPL21A	Q02753	160 aa	Known RBP	2.95	□□□□□ -1.94
APL4	YPR029C	YML122C	Q03207	126 aa		2.95	□□□□□ -1.94
APL4	YPR029C	TVP15	Q03860	143 aa		2.95	□□□□□ -1.94
APL4	YPR029C	YMR254C	Q04838	102 aa		2.95	□□□□□ -1.94
APL4	YPR029C	NDD1	Q08887	554 aa		2.95	□□□□□ -1.94
APL4	YPR029C	ATG18	P43601	500 aa		2.94	□□□□□ -1.94
APL4	YPR029C	GRX5	Q02784	150 aa		2.94	□□□□□ -1.94
APL4	YPR029C	ATP20	Q12233	115 aa		2.94	□□□□□ -1.94
APL4	YPR029C	YPL247C	Q12523	523 aa		2.94	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 65.6 ms