RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W YHR125WP38831 101 aa2.33□□□□□ -2.04
UBP8YMR223W GAA1P39012 614 aa2.33□□□□□ -2.04
UBP8YMR223W ARC15P40518 154 aaRIP-Chip data2.33□□□□□ -2.04not detected
UBP8YMR223W CAX4P53223 239 aa2.33□□□□□ -2.04
UBP8YMR223W FEX1Q08913 375 aa2.33□□□□□ -2.04
UBP8YMR223W FEX2Q08991 375 aa2.33□□□□□ -2.04
UBP8YMR223W YOL085CQ99345 113 aa2.33□□□□□ -2.04
UBP8YMR223W RSF2P46974 1380 aa2.32□□□□□ -2.04
UBP8YMR223W PDR11P40550 1411 aa2.32□□□□□ -2.04
UBP8YMR223W MET5P47169 1442 aa2.32□□□□□ -2.04
UBP8YMR223W YEL009C-AA0A023PZF2 135 aa2.32□□□□□ -2.04
UBP8YMR223W CPA1P07258 411 aaKnown RBP2.32□□□□□ -2.04
UBP8YMR223W YET1P35723 206 aa2.32□□□□□ -2.04
UBP8YMR223W YHR130CP38834 111 aa2.32□□□□□ -2.04
UBP8YMR223W YAL064WP39711 94 aa2.32□□□□□ -2.04
UBP8YMR223W SPC25P40014 221 aa2.32□□□□□ -2.04
UBP8YMR223W YGR164WP53291 111 aa2.32□□□□□ -2.04
UBP8YMR223W MPC3P53311 146 aa2.32□□□□□ -2.04
UBP8YMR223W CSI2Q08054 341 aa2.32□□□□□ -2.04
UBP8YMR223W YPR063CQ12160 140 aa2.32□□□□□ -2.04
UBP8YMR223W RPL13AQ12690 199 aaPredicted RBP2.32□□□□□ -2.04
UBP8YMR223W ODC2Q99297 307 aa2.32□□□□□ -2.04
UBP8YMR223W TRM3Q07527 1436 aa2.31□□□□□ -2.04
UBP8YMR223W BNI1P41832 1953 aa2.31□□□□□ -2.04
UBP8YMR223W ESC1Q03661 1658 aaKnown RBP2.31□□□□□ -2.04
UBP8YMR223W MSW1P04803 379 aa2.31□□□□□ -2.04
UBP8YMR223W RAD10P06838 210 aa2.31□□□□□ -2.04
UBP8YMR223W RPS19AP07280 144 aaKnown RBP2.31□□□□□ -2.04
UBP8YMR223W RPS19BP07281 144 aaPredicted RBP2.31□□□□□ -2.04
UBP8YMR223W RRT1P38192 103 aa2.31□□□□□ -2.04
UBP8YMR223W SPO73P40031 143 aa2.31□□□□□ -2.04
UBP8YMR223W YIL054WP40524 105 aa2.31□□□□□ -2.04
UBP8YMR223W SMD3P43321 101 aaKnown RBP2.31□□□□□ -2.04
UBP8YMR223W YNR064CP53750 290 aa2.31□□□□□ -2.04
UBP8YMR223W KEI1Q06346 221 aa2.31□□□□□ -2.04
UBP8YMR223W XRN1P22147 1528 aaKnown RBP2.3□□□□□ -2.04
UBP8YMR223W BPT1P14772 1559 aa2.3□□□□□ -2.04
UBP8YMR223W YHR032W-AP0C5N6 59 aa2.3□□□□□ -2.04
UBP8YMR223W MDH2P22133 377 aa2.3□□□□□ -2.04
UBP8YMR223W ECM31P38122 312 aa2.3□□□□□ -2.04
UBP8YMR223W UMP1P38293 148 aa2.3□□□□□ -2.04
UBP8YMR223W YHL042WP38729 150 aa2.3□□□□□ -2.04
UBP8YMR223W ECO1P43605 281 aa2.3□□□□□ -2.04
UBP8YMR223W YFR035CP43608 114 aa2.3□□□□□ -2.04
UBP8YMR223W UIP4Q08926 304 aa2.3□□□□□ -2.04
UBP8YMR223W RAD28Q12021 506 aa2.3□□□□□ -2.04
UBP8YMR223W MED11Q99278 115 aa2.3□□□□□ -2.04
UBP8YMR223W YOL162WP0CF19 215 aa2.29□□□□□ -2.04
UBP8YMR223W YCR099CP25657 155 aa2.29□□□□□ -2.04
UBP8YMR223W YIR035CP40579 254 aa2.29□□□□□ -2.04
UBP8YMR223W DSK2P48510 373 aa2.29□□□□□ -2.04
UBP8YMR223W MRPS8Q03799 155 aa2.29□□□□□ -2.04
UBP8YMR223W YPR174CQ06616 221 aaPredicted RBP2.29□□□□□ -2.04
UBP8YMR223W YOR385WQ08909 290 aa2.29□□□□□ -2.04
UBP8YMR223W YSP2Q06681 1438 aa2.29□□□□□ -2.04
UBP8YMR223W YLR422WQ06409 1932 aa2.29□□□□□ -2.04
UBP8YMR223W SEC7P11075 2009 aaKnown RBP2.29□□□□□ -2.04
UBP8YMR223W LTE1P07866 1435 aa2.28□□□□□ -2.04
UBP8YMR223W YEL073CP39974 107 aa2.28□□□□□ -2.04
UBP8YMR223W YIL059CP40520 121 aa2.28□□□□□ -2.04
UBP8YMR223W SPG1P50088 95 aa2.28□□□□□ -2.04
UBP8YMR223W LIP1Q03579 150 aa2.28□□□□□ -2.04
UBP8YMR223W RRT7Q07829 113 aa2.28□□□□□ -2.04
UBP8YMR223W TY1B-BRQ12193 1756 aa2.28□□□□□ -2.04
UBP8YMR223W KSH1Q8TGJ3 72 aa2.28□□□□□ -2.04
UBP8YMR223W YCF1P39109 1515 aaKnown RBP2.27□□□□□ -2.05
UBP8YMR223W AUS1Q08409 1394 aa2.27□□□□□ -2.05
UBP8YMR223W TVP23P38962 199 aa2.27□□□□□ -2.05
UBP8YMR223W YNL217WP40152 326 aa2.27□□□□□ -2.05
UBP8YMR223W YOR381W-AQ3E804 55 aa2.27□□□□□ -2.05
UBP8YMR223W FKS1P38631 1876 aaKnown RBP2.27□□□□□ -2.05
UBP8YMR223W PDR10P51533 1564 aa2.27□□□□□ -2.05
UBP8YMR223W GEA2P39993 1459 aaKnown RBP2.27□□□□□ -2.05
UBP8YMR223W COX5BP00425 151 aa2.26□□□□□ -2.05
UBP8YMR223W RAS2P01120 322 aaKnown RBP2.26□□□□□ -2.05
UBP8YMR223W SCM4P32564 187 aa2.26□□□□□ -2.05
UBP8YMR223W EMP24P32803 203 aaKnown RBP2.26□□□□□ -2.05
UBP8YMR223W FZF1P32805 299 aa2.26□□□□□ -2.05
UBP8YMR223W FLX1P40464 311 aa2.26□□□□□ -2.05
UBP8YMR223W YFR045WP43617 309 aa2.26□□□□□ -2.05
UBP8YMR223W KNH1P50112 268 aa2.26□□□□□ -2.05
UBP8YMR223W ERG25P53045 309 aa2.26□□□□□ -2.05
UBP8YMR223W SHH3Q04487 196 aa2.26□□□□□ -2.05
UBP8YMR223W SCS22Q6Q595 175 aa2.26□□□□□ -2.05
UBP8YMR223W MIC10Q96VH5 97 aa2.26□□□□□ -2.05
UBP8YMR223W ADE6P38972 1358 aaKnown RBP2.26□□□□□ -2.05
UBP8YMR223W HMRA1P0CY11 126 aa2.25□□□□□ -2.05
UBP8YMR223W UBC4P15731 148 aa2.25□□□□□ -2.05
UBP8YMR223W MAK31P23059 88 aa2.25□□□□□ -2.05
UBP8YMR223W TMA19P35691 167 aaKnown RBP2.25□□□□□ -2.05
UBP8YMR223W GTT1P40582 234 aa2.25□□□□□ -2.05
UBP8YMR223W DOC1P53068 250 aa2.25□□□□□ -2.05
UBP8YMR223W YCL001W-AP87012 153 aa2.25□□□□□ -2.05
UBP8YMR223W YMR295CQ03559 197 aa2.25□□□□□ -2.05
UBP8YMR223W FIT1Q04433 528 aa2.25□□□□□ -2.05
UBP8YMR223W YDL241WQ07738 123 aa2.25□□□□□ -2.05
UBP8YMR223W ATG10Q07879 167 aa2.25□□□□□ -2.05
UBP8YMR223W FIT3Q08907 204 aa2.25□□□□□ -2.05
UBP8YMR223W SSK2P53599 1579 aa2.25□□□□□ -2.05
UBP8YMR223W GEA1P47102 1408 aaPredicted RBP2.25□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 122.4 ms