RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C ERP1Q05359 219 aaKnown RBP4.06□□□□□ -1.76
NUP116YMR047C NAT3Q06504 195 aa4.06□□□□□ -1.76
NUP116YMR047C YLR118CQ12354 227 aa4.06□□□□□ -1.76
NUP116YMR047C RPS31P05759 152 aaKnown RBP4.06□□□□□ -1.76
NUP116YMR047C SAM35P14693 329 aa4.06□□□□□ -1.76
NUP116YMR047C RPS20P38701 121 aaKnown RBP4.06□□□□□ -1.76
NUP116YMR047C PAU15P40585 124 aa4.06□□□□□ -1.76
NUP116YMR047C PDR17P53844 350 aa4.06□□□□□ -1.76
NUP116YMR047C YMR130WQ04223 302 aa4.06□□□□□ -1.76
NUP116YMR047C LOA1Q06508 300 aa4.06□□□□□ -1.76
NUP116YMR047C CHO1P08456 276 aa4.06□□□□□ -1.76
NUP116YMR047C RPS2P25443 254 aaKnown RBP4.06□□□□□ -1.76
NUP116YMR047C POP5P28005 173 aa4.06□□□□□ -1.76
NUP116YMR047C YTH1Q06102 208 aaPredicted RBP4.06□□□□□ -1.76
NUP116YMR047C JID1Q12350 301 aa4.06□□□□□ -1.76
NUP116YMR047C AIR2Q12476 344 aaKnown RBP4.06□□□□□ -1.76
NUP116YMR047C PCL9Q12477 304 aa4.06□□□□□ -1.76
NUP116YMR047C UBA3Q99344 299 aa4.06□□□□□ -1.76
NUP116YMR047C SPS18P32572 300 aa4.05□□□□□ -1.76
NUP116YMR047C GPI18P38211 433 aa4.05□□□□□ -1.76
NUP116YMR047C GZF3P42944 551 aaKnown RBP4.05□□□□□ -1.76
NUP116YMR047C NCA3P46955 337 aa4.05□□□□□ -1.76
NUP116YMR047C FIT3Q08907 204 aa4.05□□□□□ -1.76
NUP116YMR047C MEC1P38111 2368 aa4.05□□□□□ -1.76
NUP116YMR047C EGT2P42835 1041 aa4.05□□□□□ -1.76
NUP116YMR047C TTI2P47168 421 aa4.05□□□□□ -1.76
NUP116YMR047C KNH1P50112 268 aa4.05□□□□□ -1.76
NUP116YMR047C YLR152CP54072 576 aa4.05□□□□□ -1.76
NUP116YMR047C ADD37Q03233 198 aa4.05□□□□□ -1.76
NUP116YMR047C FIT1Q04433 528 aa4.05□□□□□ -1.76
NUP116YMR047C ATG41Q12048 136 aa4.05□□□□□ -1.76
NUP116YMR047C YDR029WQ12111 104 aa4.05□□□□□ -1.76
NUP116YMR047C UBC5P15732 148 aa4.05□□□□□ -1.76
NUP116YMR047C PHO85P17157 305 aa4.05□□□□□ -1.76
NUP116YMR047C RPB9P27999 122 aa4.05□□□□□ -1.76
NUP116YMR047C PUB1P32588 453 aaKnown RBP RIP-Chip data4.04□□□□□ -1.76not detected
NUP116YMR047C SDS24P38314 527 aa4.04□□□□□ -1.76
NUP116YMR047C SGN1P40561 250 aaKnown RBP RIP-Chip data4.04□□□□□ -1.76not detected
NUP116YMR047C RPS16AP0CX51 143 aaKnown RBP4.04□□□□□ -1.76
NUP116YMR047C RPS16BP0CX52 143 aaKnown RBP4.04□□□□□ -1.76
NUP116YMR047C YBR090CP38253 122 aa4.04□□□□□ -1.76
NUP116YMR047C YER134CP40081 178 aa4.04□□□□□ -1.76
NUP116YMR047C GEP7P53171 287 aa4.04□□□□□ -1.76
NUP116YMR047C CTR3Q06686 241 aa4.04□□□□□ -1.76
NUP116YMR047C ZRT1P32804 376 aa4.03□□□□□ -1.76
NUP116YMR047C ECM33P38248 429 aaKnown RBP4.03□□□□□ -1.76
NUP116YMR047C HSP10P38910 106 aa4.03□□□□□ -1.76
NUP116YMR047C SDP1P40479 209 aa4.03□□□□□ -1.76
NUP116YMR047C YDL186WP48568 277 aa4.03□□□□□ -1.76
NUP116YMR047C VHT1P53241 593 aa4.03□□□□□ -1.76
NUP116YMR047C YBL081WP38180 368 aaKnown RBP4.03□□□□□ -1.76
NUP116YMR047C SWM2P40342 146 aa4.03□□□□□ -1.76
NUP116YMR047C RRT7Q07829 113 aa4.03□□□□□ -1.76
NUP116YMR047C YGL230CP53074 147 aa4.03□□□□□ -1.76
NUP116YMR047C ARC18Q05933 178 aaKnown RBP4.03□□□□□ -1.76
NUP116YMR047C SOD2P00447 233 aa4.02□□□□□ -1.77
NUP116YMR047C ALK2P32789 676 aaPredicted RBP4.02□□□□□ -1.77
NUP116YMR047C MIX23P38162 196 aa4.02□□□□□ -1.77
NUP116YMR047C YER079WP40052 210 aaKnown RBP4.02□□□□□ -1.77
NUP116YMR047C YJL028WP47062 111 aa4.02□□□□□ -1.77
NUP116YMR047C RXT3Q07458 294 aa4.02□□□□□ -1.77
NUP116YMR047C YFH1Q07540 174 aa4.02□□□□□ -1.77
NUP116YMR047C POR1P04840 283 aaKnown RBP4.02□□□□□ -1.77
NUP116YMR047C YPS1P32329 569 aa4.02□□□□□ -1.77
NUP116YMR047C SWD2P36104 329 aaPredicted RBP4.02□□□□□ -1.77
NUP116YMR047C OST1P41543 476 aaKnown RBP4.02□□□□□ -1.77
NUP116YMR047C CTK2P46962 323 aa4.02□□□□□ -1.77
NUP116YMR047C ARP3P47117 449 aaKnown RBP4.02□□□□□ -1.77
NUP116YMR047C YGR219WP53307 113 aa4.02□□□□□ -1.77
NUP116YMR047C HNT1Q04344 158 aaKnown RBP4.02□□□□□ -1.77
NUP116YMR047C YDL007C-AQ2V2Q0 85 aa4.02□□□□□ -1.77
NUP116YMR047C MSI1P13712 422 aa4.01□□□□□ -1.77
NUP116YMR047C BLM10P43583 2143 aa4.01□□□□□ -1.77
NUP116YMR047C PAU12P53343 120 aa4.01□□□□□ -1.77
NUP116YMR047C PGA1P53896 198 aa4.01□□□□□ -1.77
NUP116YMR047C YMR317WQ04893 1140 aa4.01□□□□□ -1.77
NUP116YMR047C PAU19P0CE85 124 aa4.01□□□□□ -1.77
NUP116YMR047C PAU21P0CE86 164 aa4.01□□□□□ -1.77
NUP116YMR047C PAU22P0CE87 164 aa4.01□□□□□ -1.77
NUP116YMR047C TOM40P23644 387 aaKnown RBP4.01□□□□□ -1.77
NUP116YMR047C PAU3P25610 124 aa4.01□□□□□ -1.77
NUP116YMR047C IES6P32617 166 aa4.01□□□□□ -1.77
NUP116YMR047C VMA11P32842 164 aa4.01□□□□□ -1.77
NUP116YMR047C CMC1P36064 111 aa4.01□□□□□ -1.77
NUP116YMR047C YMR087WQ04299 284 aa4.01□□□□□ -1.77
NUP116YMR047C YMR254CQ04838 102 aa4.01□□□□□ -1.77
NUP116YMR047C TMC1Q08422 150 aaPredicted RBP4.01□□□□□ -1.77
NUP116YMR047C ATX1P38636 73 aa4.01□□□□□ -1.77
NUP116YMR047C OST2P46964 130 aa4.01□□□□□ -1.77
NUP116YMR047C GON7P46984 123 aa4.01□□□□□ -1.77
NUP116YMR047C CAB4P53332 305 aa4.01□□□□□ -1.77
NUP116YMR047C SCW4P53334 386 aaKnown RBP4.01□□□□□ -1.77
NUP116YMR047C YOR015WQ12169 119 aa4.01□□□□□ -1.77
NUP116YMR047C MRS4P23500 304 aa4□□□□□ -1.77
NUP116YMR047C YCR007CP25354 239 aa4□□□□□ -1.77
NUP116YMR047C VMA3P25515 160 aa4□□□□□ -1.77
NUP116YMR047C RPL14AP36105 138 aaKnown RBP4□□□□□ -1.77
NUP116YMR047C SFT1P43682 97 aa4□□□□□ -1.77
NUP116YMR047C YMR082CQ04276 118 aa4□□□□□ -1.77
NUP116YMR047C ORT1Q12375 292 aa4□□□□□ -1.77
Retrieved 100 of 5,963 RNA–protein pairs in 30 ms