RNA–Protein interactions for RNA: YMR012W

CLU1, Transcript of Subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene CLU1, Length 3,834 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLU1	YMR012W	UBC5	P15732	148 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	RPC19	P28000	142 aa	Known RBP	0.75	□□□□□ -2.29
CLU1	YMR012W	YJR141W	P47172	347 aa	Predicted RBP	0.75	□□□□□ -2.29
CLU1	YMR012W	SIP18	P50263	79 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	YNR064C	P53750	290 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	SED1	Q01589	338 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	YHR086W-A	Q3E746	53 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	POR1	P04840	283 aa	Known RBP	0.75	□□□□□ -2.29
CLU1	YMR012W	UBI4	P0CG63	381 aa	Known RBP	0.75	□□□□□ -2.29
CLU1	YMR012W	SNC2	P33328	115 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	YER084W	P40057	128 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	XPT1	P47165	209 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	VPS28	Q02767	242 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	TMA23	Q03525	211 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	ECM19	Q06011	112 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	YPR174C	Q06616	221 aa	Predicted RBP	0.75	□□□□□ -2.29
CLU1	YMR012W	HUT1	Q12520	339 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	FZF1	P32805	299 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	YHR125W	P38831	101 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	SUR2	P38992	349 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	YPL073C	P40323	161 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	REE1	P40893	198 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	SLM2	P53955	656 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	YNL277W-A	Q3E7Z0	62 aa		0.75	□□□□□ -2.29
CLU1	YMR012W	YCR101C	P25607	182 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	ASK1	P35734	292 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	FES1	P38260	290 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	YEL028W	P39989	153 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	YFL051C	P43552	160 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	EMC4	P53073	190 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	SDS23	P53172	527 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	TIM13	P53299	105 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	YMR181C	Q03231	154 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.74	□□□□□ -2.29	not detected
CLU1	YMR012W	YMR230W-A	Q3E7B5	62 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	AHC2	P25649	128 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	HTD2	P38790	280 aa	Known RBP	0.74	□□□□□ -2.29
CLU1	YMR012W	CYR1	P08678	2026 aa	Known RBP	0.74	□□□□□ -2.29
CLU1	YMR012W	ATR1	P13090	542 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	PAN3	P36102	679 aa	Predicted RBP	0.74	□□□□□ -2.29
CLU1	YMR012W	SFT2	P38166	215 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	YIL054W	P40524	105 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	SYS1	P41544	203 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	YFL019C	P43576	117 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	GPI2	P46961	280 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	AIF1	P52923	378 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	YKR005C	Q02203	525 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	GPI17	Q04080	534 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	PST2	Q12335	198 aa	Known RBP	0.74	□□□□□ -2.29
CLU1	YMR012W	PSF1	Q12488	208 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	PRM4	Q12498	284 aa		0.74	□□□□□ -2.29
CLU1	YMR012W	ATP15	P21306	62 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	SDH3	P33421	198 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	EFM1	P38732	585 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	HPM1	P40481	377 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	ERP1	Q05359	219 aa	Known RBP	0.73	□□□□□ -2.29
CLU1	YMR012W	ERV2	Q12284	196 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	DDP1	Q99321	188 aa	Known RBP	0.73	□□□□□ -2.29
CLU1	YMR012W	YAR023C	D6VPM8	179 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	BET1	P22804	142 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	MCM22	P47167	239 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	UBC12	P52491	188 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	LCL1	Q02786	101 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	MIX14	Q04341	121 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	RNH202	Q05635	350 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	RPS1B	P23248	255 aa	Known RBP	0.73	□□□□□ -2.29
CLU1	YMR012W	YEA4	P40004	342 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	VTC1	P40046	129 aa	RIP-Chip data	0.73	□□□□□ -2.29	not detected
CLU1	YMR012W	NSA2	P40078	261 aa	Known RBP	0.73	□□□□□ -2.29
CLU1	YMR012W	CIN5	P40917	295 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	YMR027W	Q04371	470 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	IRC23	Q08416	157 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	CSM4	Q08955	156 aa		0.73	□□□□□ -2.29
CLU1	YMR012W	SOD1	P00445	154 aa	Known RBP	0.72	□□□□□ -2.29
CLU1	YMR012W	UBC8	P28263	218 aa		0.72	□□□□□ -2.29
CLU1	YMR012W	CLB6	P32943	380 aa		0.72	□□□□□ -2.29
CLU1	YMR012W	ASP1	P38986	381 aa	Predicted RBP	0.72	□□□□□ -2.29
CLU1	YMR012W	RPS12	P48589	143 aa	Known RBP	0.72	□□□□□ -2.29
CLU1	YMR012W	HOR7	Q05827	59 aa		0.72	□□□□□ -2.29
CLU1	YMR012W	IRC25	Q07951	179 aa		0.72	□□□□□ -2.29
CLU1	YMR012W	DGK1	Q12382	290 aa		0.72	□□□□□ -2.29
CLU1	YMR012W	YGR050C	P53231	118 aa		0.72	□□□□□ -2.29
CLU1	YMR012W	EMP24	P32803	203 aa	Known RBP	0.72	□□□□□ -2.29
CLU1	YMR012W	SYC1	Q08553	188 aa	Predicted RBP	0.72	□□□□□ -2.29
CLU1	YMR012W	FIT2	Q08906	153 aa		0.72	□□□□□ -2.29
CLU1	YMR012W	ISD11	Q6Q560	94 aa		0.72	□□□□□ -2.29
CLU1	YMR012W	SGA1	P08019	549 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	SNF4	P12904	322 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	AIM18	P38884	321 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	SER2	P42941	309 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	IRC18	P47056	224 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	YGL230C	P53074	147 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	TSA2	Q04120	196 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	DTD1	Q07648	150 aa	Known RBP	0.71	□□□□□ -2.3
CLU1	YMR012W	YDL241W	Q07738	123 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	FSF1	Q12029	327 aa	Known RBP	0.71	□□□□□ -2.3
CLU1	YMR012W	MCP1	Q12106	302 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	SPC1	P46965	94 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	YPL067C	Q02754	198 aa		0.71	□□□□□ -2.3
CLU1	YMR012W	YMR320W	Q04897	101 aa		0.71	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 9.3 ms