RNA–Protein interactions for RNA: YLR336C

SGD1, Transcript of Essential nuclear protein, yeast

Gene SGD1, Length 2,700 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SGD1	YLR336C	SMD2	Q06217	110 aa	Known RBP	0.74	□□□□□ -2.29
SGD1	YLR336C	UIP4	Q08926	304 aa		0.74	□□□□□ -2.29
SGD1	YLR336C	CMC4	Q3E7A9	73 aa		0.74	□□□□□ -2.29
SGD1	YLR336C	HFA1	P32874	2273 aa		0.74	□□□□□ -2.29
SGD1	YLR336C	RPS28B	P0C0X0	67 aa	Known RBP	0.73	□□□□□ -2.29
SGD1	YLR336C	RPS28A	Q3E7X9	67 aa	Predicted RBP	0.73	□□□□□ -2.29
SGD1	YLR336C	YGL230C	P53074	147 aa		0.73	□□□□□ -2.29
SGD1	YLR336C	MAK3	Q03503	176 aa		0.73	□□□□□ -2.29
SGD1	YLR336C	RPS25B	P0C0T4	108 aa	Known RBP	0.73	□□□□□ -2.29
SGD1	YLR336C	YKR070W	P36151	352 aa	Known RBP	0.73	□□□□□ -2.29
SGD1	YLR336C	DER1	P38307	211 aa		0.73	□□□□□ -2.29
SGD1	YLR336C	DLS1	P40366	167 aa		0.73	□□□□□ -2.29
SGD1	YLR336C	APQ12	P40532	138 aa		0.73	□□□□□ -2.29
SGD1	YLR336C	YGL193C	P53097	103 aa		0.73	□□□□□ -2.29
SGD1	YLR336C	NSL1	Q12143	216 aa		0.73	□□□□□ -2.29
SGD1	YLR336C	RPS25A	Q3E792	108 aa	Predicted RBP	0.73	□□□□□ -2.29
SGD1	YLR336C	RIF1	P29539	1916 aa		0.72	□□□□□ -2.29
SGD1	YLR336C	RPL37B	P51402	88 aa	Known RBP	0.72	□□□□□ -2.29
SGD1	YLR336C	YDR476C	Q03362	224 aa		0.72	□□□□□ -2.29
SGD1	YLR336C	BUD4	P47136	1447 aa		0.72	□□□□□ -2.29
SGD1	YLR336C	SRP102	P36057	244 aa	Predicted RBP	0.72	□□□□□ -2.29
SGD1	YLR336C	CCW12	Q12127	133 aa		0.72	□□□□□ -2.29
SGD1	YLR336C	TAF2	P23255	1407 aa		0.71	□□□□□ -2.3
SGD1	YLR336C	PEX34	P25584	144 aa		0.71	□□□□□ -2.3
SGD1	YLR336C	SPT14	P32363	452 aa		0.71	□□□□□ -2.3
SGD1	YLR336C	YJL218W	P40892	196 aa	Known RBP	0.71	□□□□□ -2.3
SGD1	YLR336C	DCV1	P43595	202 aa		0.71	□□□□□ -2.3
SGD1	YLR336C	EFG1	Q3E705	233 aa	Known RBP	0.71	□□□□□ -2.3
SGD1	YLR336C	HSP150	P32478	413 aa		0.71	□□□□□ -2.3
SGD1	YLR336C	UBC6	P33296	250 aa	Predicted RBP	0.71	□□□□□ -2.3
SGD1	YLR336C	YEL014C	P39999	101 aa		0.71	□□□□□ -2.3
SGD1	YLR336C	CIN5	P40917	295 aa		0.71	□□□□□ -2.3
SGD1	YLR336C	FCY1	Q12178	158 aa		0.71	□□□□□ -2.3
SGD1	YLR336C	CHC1	P22137	1653 aa	Known RBP	0.71	□□□□□ -2.3
SGD1	YLR336C	ULS1	Q08562	1619 aa		0.7	□□□□□ -2.3
SGD1	YLR336C	YER188C-A	P0C0V2	99 aa		0.7	□□□□□ -2.3
SGD1	YLR336C	CDC39	P25655	2108 aa	Known RBP	0.7	□□□□□ -2.3
SGD1	YLR336C	GLC8	P41818	229 aa		0.7	□□□□□ -2.3
SGD1	YLR336C	GEP7	P53171	287 aa		0.7	□□□□□ -2.3
SGD1	YLR336C	SNT2	P53127	1403 aa		0.7	□□□□□ -2.3
SGD1	YLR336C	ADE6	P38972	1358 aa	Known RBP	0.7	□□□□□ -2.3
SGD1	YLR336C	KIN28	P06242	306 aa		0.7	□□□□□ -2.3
SGD1	YLR336C	BUB2	P26448	306 aa	Predicted RBP	0.7	□□□□□ -2.3
SGD1	YLR336C	YAR064W	P39563	99 aa		0.7	□□□□□ -2.3
SGD1	YLR336C	YDC1	Q02896	317 aa		0.7	□□□□□ -2.3
SGD1	YLR336C	PRE1	P22141	198 aa	Known RBP	0.69	□□□□□ -2.3
SGD1	YLR336C	UGX2	P32772	223 aa		0.69	□□□□□ -2.3
SGD1	YLR336C	FIG1	P38224	298 aa		0.69	□□□□□ -2.3
SGD1	YLR336C	YER181C	P40097	107 aa		0.69	□□□□□ -2.3
SGD1	YLR336C	KEI1	Q06346	221 aa		0.69	□□□□□ -2.3
SGD1	YLR336C	YBR027C	P38220	110 aa		0.69	□□□□□ -2.3
SGD1	YLR336C	YJR015W	P47090	510 aa		0.69	□□□□□ -2.3
SGD1	YLR336C	RFU1	Q08003	200 aa		0.69	□□□□□ -2.3
SGD1	YLR336C	SRP21	P32342	167 aa		0.68	□□□□□ -2.3
SGD1	YLR336C	AIM36	Q03798	255 aa		0.68	□□□□□ -2.3
SGD1	YLR336C	IRC19	Q07843	230 aa		0.68	□□□□□ -2.3
SGD1	YLR336C	PET20	Q99373	253 aa		0.68	□□□□□ -2.3
SGD1	YLR336C	PBI2	P0CT04	75 aa	Known RBP	0.68	□□□□□ -2.3
SGD1	YLR336C	PHO13	P19881	312 aa		0.68	□□□□□ -2.3
SGD1	YLR336C	ARC19	P33204	171 aa	Known RBP	0.68	□□□□□ -2.3
SGD1	YLR336C	MRPL24	P36525	258 aa	Predicted RBP	0.68	□□□□□ -2.3
SGD1	YLR336C	RCF2	P53721	224 aa		0.68	□□□□□ -2.3
SGD1	YLR336C	FMN1	Q03778	218 aa		0.68	□□□□□ -2.3
SGD1	YLR336C	NMA1	Q06178	401 aa	Known RBP	0.68	□□□□□ -2.3
SGD1	YLR336C	UBR1	P19812	1950 aa		0.68	□□□□□ -2.3
SGD1	YLR336C	IPT1	P38954	527 aa		0.67	□□□□□ -2.3
SGD1	YLR336C	DDR48	P18899	430 aa	Known RBP	0.67	□□□□□ -2.3
SGD1	YLR336C	YOL013W-A	P0C272	63 aa	Predicted RBP	0.66	□□□□□ -2.3
SGD1	YLR336C	YIL102C	P40488	101 aa		0.66	□□□□□ -2.3
SGD1	YLR336C	DOP1	Q03921	1698 aa		0.66	□□□□□ -2.3
SGD1	YLR336C	APS3	P47064	194 aa		0.66	□□□□□ -2.3
SGD1	YLR336C	YPD1	Q07688	167 aa		0.66	□□□□□ -2.3
SGD1	YLR336C	GCN1	P33892	2672 aa	Known RBP	0.66	□□□□□ -2.3
SGD1	YLR336C	IML1	P47170	1584 aa		0.66	□□□□□ -2.3
SGD1	YLR336C	YCR001W	P25347	104 aa		0.66	□□□□□ -2.3
SGD1	YLR336C	ATG8	P38182	117 aa	RIP-Chip data	0.66	□□□□□ -2.3	not detected
SGD1	YLR336C	VAM10	Q08474	114 aa		0.65	□□□□□ -2.31
SGD1	YLR336C	SSN2	P38931	1420 aa		0.65	□□□□□ -2.31
SGD1	YLR336C	YGL041W-A	P0C5N3	154 aa		0.65	□□□□□ -2.31
SGD1	YLR336C	ECM31	P38122	312 aa		0.65	□□□□□ -2.31
SGD1	YLR336C	EST3	Q03096	181 aa		0.65	□□□□□ -2.31
SGD1	YLR336C	TMA23	Q03525	211 aa		0.65	□□□□□ -2.31
SGD1	YLR336C	SCS22	Q6Q595	175 aa		0.65	□□□□□ -2.31
SGD1	YLR336C	XRN1	P22147	1528 aa	Known RBP	0.64	□□□□□ -2.31
SGD1	YLR336C	QCR6	P00127	147 aa		0.64	□□□□□ -2.31
SGD1	YLR336C	RRT7	Q07829	113 aa		0.64	□□□□□ -2.31
SGD1	YLR336C	SPP41	P38904	1435 aa		0.64	□□□□□ -2.31
SGD1	YLR336C	PRP8	P33334	2413 aa	Known RBP	0.64	□□□□□ -2.31
SGD1	YLR336C	PET54	P10834	293 aa		0.64	□□□□□ -2.31
SGD1	YLR336C	COX5B	P00425	151 aa		0.63	□□□□□ -2.31
SGD1	YLR336C	YPR153W	Q06537	140 aa		0.63	□□□□□ -2.31
SGD1	YLR336C	GPI11	Q06636	219 aa		0.63	□□□□□ -2.31
SGD1	YLR336C	HSP12	P22943	109 aa	Known RBP	0.63	□□□□□ -2.31
SGD1	YLR336C	IPI1	P38803	334 aa	Predicted RBP	0.63	□□□□□ -2.31
SGD1	YLR336C	RIB3	Q99258	208 aa		0.63	□□□□□ -2.31
SGD1	YLR336C	YRF1-2	P40105	1681 aa		0.63	□□□□□ -2.31
SGD1	YLR336C	BPT1	P14772	1559 aa		0.62	□□□□□ -2.31
SGD1	YLR336C	FMP49	A0A023PZB3	126 aa		0.62	□□□□□ -2.31
SGD1	YLR336C	HYP2	P23301	157 aa	Known RBP	0.62	□□□□□ -2.31
SGD1	YLR336C	DIE2	P50076	525 aa		0.62	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 31.3 ms