RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C ADE6P38972 1358 aaKnown RBP1.17□□□□□ -2.22
UBP11YKR098C RPS25BP0C0T4 108 aaKnown RBP1.17□□□□□ -2.22
UBP11YKR098C YCL042WP25572 119 aa1.17□□□□□ -2.22
UBP11YKR098C SHB17P36136 271 aaKnown RBP1.17□□□□□ -2.22
UBP11YKR098C YGR042WP53227 271 aa1.17□□□□□ -2.22
UBP11YKR098C RPS25AQ3E792 108 aaPredicted RBP1.17□□□□□ -2.22
UBP11YKR098C COA3Q3E7B2 85 aa1.17□□□□□ -2.22
UBP11YKR098C AQY2P0CD90 149 aa1.17□□□□□ -2.22
UBP11YKR098C AHT1P29589 182 aa1.17□□□□□ -2.22
UBP11YKR098C GIM4P40005 111 aaKnown RBP1.17□□□□□ -2.22
UBP11YKR098C YGL204CP53089 101 aa1.17□□□□□ -2.22
UBP11YKR098C RCF2P53721 224 aa1.17□□□□□ -2.22
UBP11YKR098C TAF2P23255 1407 aa1.16□□□□□ -2.22
UBP11YKR098C RPC19P28000 142 aaKnown RBP1.16□□□□□ -2.22
UBP11YKR098C POP7P38291 140 aa1.16□□□□□ -2.22
UBP11YKR098C YGR039WP53225 103 aa1.16□□□□□ -2.22
UBP11YKR098C HHO1P53551 258 aa1.16□□□□□ -2.22
UBP11YKR098C FMN1Q03778 218 aa1.16□□□□□ -2.22
UBP11YKR098C NMA1Q06178 401 aaKnown RBP1.16□□□□□ -2.22
UBP11YKR098C IRC19Q07843 230 aa1.16□□□□□ -2.22
UBP11YKR098C CMC4Q3E7A9 73 aa1.16□□□□□ -2.22
UBP11YKR098C SUI1P32911 108 aaKnown RBP1.15□□□□□ -2.22
UBP11YKR098C YBR242WP38331 238 aa1.15□□□□□ -2.22
UBP11YKR098C GLC8P41818 229 aa1.15□□□□□ -2.22
UBP11YKR098C ATP19P81451 68 aa1.15□□□□□ -2.23
UBP11YKR098C KEI1Q06346 221 aa1.15□□□□□ -2.23
UBP11YKR098C SPC3Q12133 184 aa1.15□□□□□ -2.23
UBP11YKR098C YHR140WP38842 239 aa1.14□□□□□ -2.23
UBP11YKR098C YEL014CP39999 101 aa1.14□□□□□ -2.23
UBP11YKR098C PHB1P40961 287 aa1.14□□□□□ -2.23
UBP11YKR098C YHR212W-AP0CX91 67 aa1.14□□□□□ -2.23
UBP11YKR098C TRS20P38334 175 aa1.14□□□□□ -2.23
UBP11YKR098C YLR361C-AQ3E795 98 aa1.14□□□□□ -2.23
UBP11YKR098C YGL041W-AP0C5N3 154 aa1.13□□□□□ -2.23
UBP11YKR098C HSP150P32478 413 aa1.13□□□□□ -2.23
UBP11YKR098C YGL230CP53074 147 aa1.13□□□□□ -2.23
UBP11YKR098C YCL001W-AP87012 153 aa1.13□□□□□ -2.23
UBP11YKR098C COX5BP00425 151 aa1.13□□□□□ -2.23
UBP11YKR098C SUA7P29055 345 aaPredicted RBP1.13□□□□□ -2.23
UBP11YKR098C RPL14AP36105 138 aaKnown RBP1.13□□□□□ -2.23
UBP11YKR098C MRPL15P36523 253 aa1.13□□□□□ -2.23
UBP11YKR098C PRS3P38689 320 aaKnown RBP1.13□□□□□ -2.23
UBP11YKR098C RPL14BP38754 138 aaKnown RBP1.13□□□□□ -2.23
UBP11YKR098C YNL019CP53975 284 aa1.13□□□□□ -2.23
UBP11YKR098C YPR203WQ08994 102 aa1.13□□□□□ -2.23
UBP11YKR098C TIM8P57744 87 aa1.12□□□□□ -2.23
UBP11YKR098C RPS1BP23248 255 aaKnown RBP1.11□□□□□ -2.23
UBP11YKR098C ECM31P38122 312 aa1.11□□□□□ -2.23
UBP11YKR098C IPT1P38954 527 aa1.11□□□□□ -2.23
UBP11YKR098C HPM1P40481 377 aa1.11□□□□□ -2.23
UBP11YKR098C VAR1P02381 398 aa1.11□□□□□ -2.23
UBP11YKR098C KIN28P06242 306 aa1.11□□□□□ -2.23
UBP11YKR098C PRE1P22141 198 aaKnown RBP1.11□□□□□ -2.23
UBP11YKR098C FYV5P25585 152 aa1.11□□□□□ -2.23
UBP11YKR098C VMA10P48836 114 aaKnown RBP1.11□□□□□ -2.23
UBP11YKR098C DIE2P50076 525 aa1.11□□□□□ -2.23
UBP11YKR098C DYN2Q02647 92 aa1.11□□□□□ -2.23
UBP11YKR098C FIT1Q04433 528 aa1.11□□□□□ -2.23
UBP11YKR098C YPR153WQ06537 140 aa1.11□□□□□ -2.23
UBP11YKR098C YOR385WQ08909 290 aa1.11□□□□□ -2.23
UBP11YKR098C ATP14Q12349 124 aa1.11□□□□□ -2.23
UBP11YKR098C HYM1P32464 399 aa1.1□□□□□ -2.23
UBP11YKR098C YKR070WP36151 352 aaKnown RBP1.1□□□□□ -2.23
UBP11YKR098C YHL037CP38733 133 aa1.1□□□□□ -2.23
UBP11YKR098C LSM8P47093 109 aaKnown RBP1.1□□□□□ -2.23
UBP11YKR098C SPG1P50088 95 aa1.1□□□□□ -2.23
UBP11YKR098C EMC4P53073 190 aa1.1□□□□□ -2.23
UBP11YKR098C YDR278CQ05612 105 aa1.1□□□□□ -2.23
UBP11YKR098C SOM1Q05676 74 aa1.1□□□□□ -2.23
UBP11YKR098C FCY1Q12178 158 aa1.1□□□□□ -2.23
UBP11YKR098C FMP49A0A023PZB3 126 aa1.1□□□□□ -2.23
UBP11YKR098C RPS1AP33442 255 aaKnown RBP1.1□□□□□ -2.23
UBP11YKR098C RPS20P38701 121 aaKnown RBP1.1□□□□□ -2.23
UBP11YKR098C APS3P47064 194 aa1.1□□□□□ -2.23
UBP11YKR098C ELC1Q03071 99 aa1.1□□□□□ -2.23
UBP11YKR098C GPI11Q06636 219 aa1.1□□□□□ -2.23
UBP11YKR098C HUT1Q12520 339 aa1.1□□□□□ -2.23
UBP11YKR098C YNL277W-AQ3E7Z0 62 aa1.1□□□□□ -2.23
UBP11YKR098C SLH1P53327 1967 aaKnown RBP1.09□□□□□ -2.23
UBP11YKR098C NHP6AP11632 93 aaKnown RBP1.09□□□□□ -2.23
UBP11YKR098C YGR017WP53210 297 aa1.09□□□□□ -2.23
UBP11YKR098C TVP18Q04767 167 aa1.09□□□□□ -2.23
UBP11YKR098C DDP1Q99321 188 aaKnown RBP1.09□□□□□ -2.23
UBP11YKR098C RAD50P12753 1312 aa1.09□□□□□ -2.24
UBP11YKR098C YCR050CP25630 102 aa1.08□□□□□ -2.24
UBP11YKR098C ATG8P38182 117 aaRIP-Chip data1.08□□□□□ -2.24not detected
UBP11YKR098C YBR027CP38220 110 aa1.08□□□□□ -2.24
UBP11YKR098C YFL051CP43552 160 aa1.08□□□□□ -2.24
UBP11YKR098C TMA23Q03525 211 aa1.08□□□□□ -2.24
UBP11YKR098C CNL1Q06333 122 aa1.08□□□□□ -2.24
UBP11YKR098C YAL064WP39711 94 aa1.08□□□□□ -2.24
UBP11YKR098C RAF1Q06891 181 aa1.08□□□□□ -2.24
UBP11YKR098C HFA1P32874 2273 aa1.08□□□□□ -2.24
UBP11YKR098C SFT1P43682 97 aa1.07□□□□□ -2.24
UBP11YKR098C HYP2P23301 157 aaKnown RBP1.07□□□□□ -2.24
UBP11YKR098C NKP2Q06162 153 aa1.07□□□□□ -2.24
UBP11YKR098C VAM10Q08474 114 aa1.07□□□□□ -2.24
UBP11YKR098C PHS1P40857 217 aa1.06□□□□□ -2.24
UBP11YKR098C DCV1P43595 202 aa1.06□□□□□ -2.24
UBP11YKR098C MHF1Q3E835 90 aa1.06□□□□□ -2.24
Retrieved 100 of 5,963 RNA–protein pairs in 115.5 ms