RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W YGL014C-AP0C5N1 53 aa-0.05□□□□□ -2.42
PRP42YDR235W UBI4P0CG63 381 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W HYP2P23301 157 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W NUF2P33895 451 aa-0.05□□□□□ -2.42
PRP42YDR235W UTP11P34247 250 aaPredicted RBP-0.05□□□□□ -2.42
PRP42YDR235W MRPL24P36525 258 aaPredicted RBP-0.05□□□□□ -2.42
PRP42YDR235W ECM31P38122 312 aa-0.05□□□□□ -2.42
PRP42YDR235W YJL218WP40892 196 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W BLM10P43583 2143 aa-0.05□□□□□ -2.42
PRP42YDR235W YNR064CP53750 290 aa-0.05□□□□□ -2.42
PRP42YDR235W YNL140CP53910 189 aa-0.05□□□□□ -2.42
PRP42YDR235W YCL001W-AP87012 153 aa-0.05□□□□□ -2.42
PRP42YDR235W YET3Q07451 203 aa-0.05□□□□□ -2.42
PRP42YDR235W PEX11Q12462 236 aa-0.05□□□□□ -2.42
PRP42YDR235W HUG1Q6Q5K6 68 aa-0.05□□□□□ -2.42
PRP42YDR235W URA2P07259 2214 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W CDC39P25655 2108 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W CHD1P32657 1468 aa-0.05□□□□□ -2.42
PRP42YDR235W RTC6O14464 93 aa-0.05□□□□□ -2.42
PRP42YDR235W ATP5P09457 212 aa-0.05□□□□□ -2.42
PRP42YDR235W PHO13P19881 312 aa-0.05□□□□□ -2.42
PRP42YDR235W FYV5P25585 152 aa-0.05□□□□□ -2.42
PRP42YDR235W SUA7P29055 345 aaPredicted RBP-0.05□□□□□ -2.42
PRP42YDR235W RPA12P32529 125 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W YBR013CP38215 129 aa-0.05□□□□□ -2.42
PRP42YDR235W SEC72P39742 193 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W XPT1P47165 209 aa-0.05□□□□□ -2.42
PRP42YDR235W YGL101WP53144 215 aa-0.05□□□□□ -2.42
PRP42YDR235W CWC21Q03375 135 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W NMA1Q06178 401 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W RFU1Q08003 200 aa-0.05□□□□□ -2.42
PRP42YDR235W YPR202WQ08993 238 aa-0.05□□□□□ -2.42
PRP42YDR235W YLR050CQ12155 161 aaKnown RBP-0.05□□□□□ -2.42
PRP42YDR235W MHF1Q3E835 90 aa-0.05□□□□□ -2.42
PRP42YDR235W SCS22Q6Q595 175 aa-0.05□□□□□ -2.42
PRP42YDR235W MYO1P08964 1928 aa-0.06□□□□□ -2.42
PRP42YDR235W ADE6P38972 1358 aaKnown RBP-0.06□□□□□ -2.42
PRP42YDR235W URB1P34241 1764 aaKnown RBP-0.06□□□□□ -2.42
PRP42YDR235W PEX34P25584 144 aa-0.06□□□□□ -2.42
PRP42YDR235W BUB2P26448 306 aaPredicted RBP-0.06□□□□□ -2.42
PRP42YDR235W TRR1P29509 319 aaKnown RBP-0.06□□□□□ -2.42
PRP42YDR235W RME1P32338 300 aaKnown RBP-0.06□□□□□ -2.42
PRP42YDR235W HTD2P38790 280 aaKnown RBP-0.06□□□□□ -2.42
PRP42YDR235W YER181CP40097 107 aa-0.06□□□□□ -2.42
PRP42YDR235W YGR201CP42936 225 aa-0.06□□□□□ -2.42
PRP42YDR235W YFR035CP43608 114 aa-0.06□□□□□ -2.42
PRP42YDR235W YJL009WP47078 108 aa-0.06□□□□□ -2.42
PRP42YDR235W MIC27P50945 234 aa-0.06□□□□□ -2.42
PRP42YDR235W RCF2P53721 224 aa-0.06□□□□□ -2.42
PRP42YDR235W LSM3P57743 89 aaKnown RBP-0.06□□□□□ -2.42
PRP42YDR235W YMR122CQ03879 124 aa-0.06□□□□□ -2.42
PRP42YDR235W YMR321CQ04898 105 aa-0.06□□□□□ -2.42
PRP42YDR235W GPI11Q06636 219 aa-0.06□□□□□ -2.42
PRP42YDR235W YLR046CQ12253 270 aa-0.06□□□□□ -2.42
PRP42YDR235W BNI1P41832 1953 aa-0.07□□□□□ -2.42
PRP42YDR235W SPA2P23201 1466 aaKnown RBP-0.07□□□□□ -2.42
PRP42YDR235W FAS2P19097 1887 aaKnown RBP-0.07□□□□□ -2.42
PRP42YDR235W SNT2P53127 1403 aa-0.07□□□□□ -2.42
PRP42YDR235W YGL041W-AP0C5N3 154 aa-0.07□□□□□ -2.42
PRP42YDR235W RPL30P14120 105 aaKnown RBP-0.07□□□□□ -2.42
PRP42YDR235W FUN14P18411 198 aa-0.07□□□□□ -2.42
PRP42YDR235W RPS1BP23248 255 aaKnown RBP-0.07□□□□□ -2.42
PRP42YDR235W ATP7P30902 174 aa-0.07□□□□□ -2.42
PRP42YDR235W SRP102P36057 244 aaPredicted RBP-0.07□□□□□ -2.42
PRP42YDR235W EMC4P53073 190 aa-0.07□□□□□ -2.42
PRP42YDR235W YGL149WP53116 101 aa-0.07□□□□□ -2.42
PRP42YDR235W EST3Q03096 181 aa-0.07□□□□□ -2.42
PRP42YDR235W PLP1Q04004 230 aa-0.07□□□□□ -2.42
PRP42YDR235W COA4Q05809 96 aa-0.07□□□□□ -2.42
PRP42YDR235W YPR153WQ06537 140 aa-0.07□□□□□ -2.42
PRP42YDR235W YOL164W-AQ3E7A5 60 aa-0.07□□□□□ -2.42
PRP42YDR235W TY4B-JP47024 1803 aa-0.07□□□□□ -2.42
PRP42YDR235W YRF1-3P0CX14 1859 aa-0.07□□□□□ -2.42
PRP42YDR235W YRF1-7P0CX15 1859 aa-0.07□□□□□ -2.42
PRP42YDR235W BRR2P32639 2163 aaKnown RBP-0.08□□□□□ -2.42
PRP42YDR235W SEC16P48415 2195 aaKnown RBP-0.08□□□□□ -2.42
PRP42YDR235W NHP6AP11632 93 aaKnown RBP-0.08□□□□□ -2.42
PRP42YDR235W NMT1P14743 455 aa-0.08□□□□□ -2.42
PRP42YDR235W EGD2P38879 174 aaKnown RBP-0.08□□□□□ -2.42
PRP42YDR235W DLS1P40366 167 aa-0.08□□□□□ -2.42
PRP42YDR235W POR2P40478 281 aa-0.08□□□□□ -2.42
PRP42YDR235W PHB1P40961 287 aa-0.08□□□□□ -2.42
PRP42YDR235W LST8P41318 303 aa-0.08□□□□□ -2.42
PRP42YDR235W YNL019CP53975 284 aa-0.08□□□□□ -2.42
PRP42YDR235W YPL067CQ02754 198 aa-0.08□□□□□ -2.42
PRP42YDR235W LCL1Q02786 101 aa-0.08□□□□□ -2.42
PRP42YDR235W IRC21Q04772 201 aa-0.08□□□□□ -2.42
PRP42YDR235W YMR320WQ04897 101 aa-0.08□□□□□ -2.42
PRP42YDR235W FIT3Q08907 204 aa-0.08□□□□□ -2.42
PRP42YDR235W YOR385WQ08909 290 aa-0.08□□□□□ -2.42
PRP42YDR235W GTT2Q12390 233 aa-0.08□□□□□ -2.42
PRP42YDR235W RDI1Q12434 202 aa-0.08□□□□□ -2.42
PRP42YDR235W CMD1P06787 147 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W YSF3P0C074 85 aaPredicted RBP-0.09□□□□□ -2.42
PRP42YDR235W RPS1AP33442 255 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W SRX1P36077 127 aa-0.09□□□□□ -2.42
PRP42YDR235W RPL14AP36105 138 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W SRL3P36167 246 aa-0.09□□□□□ -2.42
PRP42YDR235W RPL14BP38754 138 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W IPI1P38803 334 aaPredicted RBP-0.09□□□□□ -2.42
Retrieved 100 of 5,963 RNA–protein pairs in 88.2 ms