RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C YGL193CP53097 103 aa0.82□□□□□ -2.28
RUB1YDR139C RCF2P53721 224 aa0.82□□□□□ -2.28
RUB1YDR139C HAP2P06774 265 aa0.81□□□□□ -2.28
RUB1YDR139C ATG8P38182 117 aaRIP-Chip data0.81□□□□□ -2.28not detected
RUB1YDR139C IPT1P38954 527 aa0.81□□□□□ -2.28
RUB1YDR139C ROM2P51862 1356 aaKnown RBP0.81□□□□□ -2.28
RUB1YDR139C YPD1Q07688 167 aa0.8□□□□□ -2.28
RUB1YDR139C IRC19Q07843 230 aa0.8□□□□□ -2.28
RUB1YDR139C QCR2P07257 368 aa0.79□□□□□ -2.28
RUB1YDR139C RPS22AP0C0W1 130 aaKnown RBP0.79□□□□□ -2.28
RUB1YDR139C APQ12P40532 138 aa0.79□□□□□ -2.28
RUB1YDR139C FIP1P45976 327 aa0.79□□□□□ -2.28
RUB1YDR139C MGR2Q02889 113 aa0.79□□□□□ -2.28
RUB1YDR139C YPR202WQ08993 238 aa0.79□□□□□ -2.28
RUB1YDR139C RPS22BQ3E7Y3 130 aaKnown RBP0.79□□□□□ -2.28
RUB1YDR139C SRP21P32342 167 aa0.78□□□□□ -2.28
RUB1YDR139C RFU1Q08003 200 aa0.78□□□□□ -2.28
RUB1YDR139C RIB3Q99258 208 aa0.78□□□□□ -2.28
RUB1YDR139C HSL1P34244 1518 aa0.78□□□□□ -2.28
RUB1YDR139C PEX34P25584 144 aa0.77□□□□□ -2.29
RUB1YDR139C SLM6P38343 150 aa0.77□□□□□ -2.29
RUB1YDR139C ATP19P81451 68 aa0.77□□□□□ -2.29
RUB1YDR139C SED1Q01589 338 aa0.77□□□□□ -2.29
RUB1YDR139C PRM3Q08931 133 aa0.77□□□□□ -2.29
RUB1YDR139C PBI2P0CT04 75 aaKnown RBP0.76□□□□□ -2.29
RUB1YDR139C SEN15Q04675 128 aa0.76□□□□□ -2.29
RUB1YDR139C RRT7Q07829 113 aa0.76□□□□□ -2.29
RUB1YDR139C HFA1P32874 2273 aa0.75□□□□□ -2.29
RUB1YDR139C RPL33AP05744 107 aaKnown RBP0.75□□□□□ -2.29
RUB1YDR139C YER181CP40097 107 aa0.75□□□□□ -2.29
RUB1YDR139C YPR153WQ06537 140 aa0.75□□□□□ -2.29
RUB1YDR139C GPI11Q06636 219 aa0.75□□□□□ -2.29
RUB1YDR139C NSL1Q12143 216 aa0.75□□□□□ -2.29
RUB1YDR139C RPS28BP0C0X0 67 aaKnown RBP0.74□□□□□ -2.29
RUB1YDR139C PHO13P19881 312 aa0.74□□□□□ -2.29
RUB1YDR139C BUB2P26448 306 aaPredicted RBP0.74□□□□□ -2.29
RUB1YDR139C MRPL24P36525 258 aaPredicted RBP0.74□□□□□ -2.29
RUB1YDR139C AME1P38313 324 aa0.74□□□□□ -2.29
RUB1YDR139C GPI2P46961 280 aa0.74□□□□□ -2.29
RUB1YDR139C RPS28AQ3E7X9 67 aaPredicted RBP0.74□□□□□ -2.29
RUB1YDR139C EFG1Q3E705 233 aaKnown RBP0.73□□□□□ -2.29
RUB1YDR139C SCS22Q6Q595 175 aa0.73□□□□□ -2.29
RUB1YDR139C YMR141CP40211 102 aa0.72□□□□□ -2.29
RUB1YDR139C YJL218WP40892 196 aaKnown RBP0.72□□□□□ -2.29
RUB1YDR139C VMA10P48836 114 aaKnown RBP0.72□□□□□ -2.29
RUB1YDR139C NHP6AP11632 93 aaKnown RBP0.71□□□□□ -2.3
RUB1YDR139C DDR48P18899 430 aaKnown RBP0.71□□□□□ -2.3
RUB1YDR139C DER1P38307 211 aa0.71□□□□□ -2.3
RUB1YDR139C IRC21Q04772 201 aa0.71□□□□□ -2.3
RUB1YDR139C YJL009WP47078 108 aa0.7□□□□□ -2.3
RUB1YDR139C DIE2P50076 525 aa0.69□□□□□ -2.3
RUB1YDR139C EST3Q03096 181 aa0.69□□□□□ -2.3
RUB1YDR139C MHF1Q3E835 90 aa0.69□□□□□ -2.3
RUB1YDR139C YGL014C-AP0C5N1 53 aa0.68□□□□□ -2.3
RUB1YDR139C RPL43AP0CX25 92 aaKnown RBP0.68□□□□□ -2.3
RUB1YDR139C RPL43BP0CX26 92 aa0.68□□□□□ -2.3
RUB1YDR139C SRL3P36167 246 aa0.68□□□□□ -2.3
RUB1YDR139C YHR140WP38842 239 aa0.67□□□□□ -2.3
RUB1YDR139C HUT1Q12520 339 aa0.67□□□□□ -2.3
RUB1YDR139C COX5BP00425 151 aa0.66□□□□□ -2.3
RUB1YDR139C PRP8P33334 2413 aaKnown RBP0.66□□□□□ -2.3
RUB1YDR139C YMR122CQ03879 124 aa0.65□□□□□ -2.31
RUB1YDR139C HSP12P22943 109 aaKnown RBP0.63□□□□□ -2.31
RUB1YDR139C YCL001W-AP87012 153 aa0.63□□□□□ -2.31
RUB1YDR139C YLR307C-AQ3E825 87 aa0.63□□□□□ -2.31
RUB1YDR139C FYV5P25585 152 aa0.62□□□□□ -2.31
RUB1YDR139C RME1P32338 300 aaKnown RBP0.62□□□□□ -2.31
RUB1YDR139C FIG1P38224 298 aa0.62□□□□□ -2.31
RUB1YDR139C MVB12P42939 101 aa0.62□□□□□ -2.31
RUB1YDR139C YNL019CP53975 284 aa0.62□□□□□ -2.31
RUB1YDR139C KTI11Q3E840 82 aa0.62□□□□□ -2.31
RUB1YDR139C COA6Q3E846 104 aa0.62□□□□□ -2.31
RUB1YDR139C UBR1P19812 1950 aa0.61□□□□□ -2.31
RUB1YDR139C CDC39P25655 2108 aaKnown RBP0.61□□□□□ -2.31
RUB1YDR139C RPS1BP23248 255 aaKnown RBP0.61□□□□□ -2.31
RUB1YDR139C LST8P41318 303 aa0.61□□□□□ -2.31
RUB1YDR139C YLR157W-EP0CF00 54 aa0.6□□□□□ -2.31
RUB1YDR139C PET20Q99373 253 aa0.6□□□□□ -2.31
RUB1YDR139C RAV2Q03956 351 aa0.59□□□□□ -2.31
RUB1YDR139C SOM1Q05676 74 aa0.59□□□□□ -2.31
RUB1YDR139C ANB1P19211 157 aa0.58□□□□□ -2.32
RUB1YDR139C PHB1P40961 287 aa0.58□□□□□ -2.32
RUB1YDR139C YGR201CP42936 225 aa0.58□□□□□ -2.32
RUB1YDR139C TLG1Q03322 224 aa0.58□□□□□ -2.32
RUB1YDR139C YHR213WP0CI67 198 aa0.57□□□□□ -2.32
RUB1YDR139C NMT1P14743 455 aa0.57□□□□□ -2.32
RUB1YDR139C IPI1P38803 334 aaPredicted RBP0.57□□□□□ -2.32
RUB1YDR139C PKR1Q03880 122 aaKnown RBP0.57□□□□□ -2.32
RUB1YDR139C COA4Q05809 96 aa0.57□□□□□ -2.32
RUB1YDR139C RAF1Q06891 181 aa0.57□□□□□ -2.32
RUB1YDR139C NAT5Q08689 176 aa0.57□□□□□ -2.32
RUB1YDR139C YOR034C-AQ3E735 80 aa0.57□□□□□ -2.32
RUB1YDR139C HUG1Q6Q5K6 68 aa0.57□□□□□ -2.32
RUB1YDR139C FUN14P18411 198 aa0.56□□□□□ -2.32
RUB1YDR139C YMR321CQ04898 105 aa0.56□□□□□ -2.32
RUB1YDR139C FIT3Q08907 204 aa0.56□□□□□ -2.32
RUB1YDR139C DDP1Q99321 188 aaKnown RBP0.56□□□□□ -2.32
RUB1YDR139C LSM1P47017 172 aaKnown RBP0.55□□□□□ -2.32
RUB1YDR139C RPL40AP0CH08 128 aaKnown RBP0.54□□□□□ -2.32
RUB1YDR139C RPL40BP0CH09 128 aaKnown RBP0.54□□□□□ -2.32
Retrieved 100 of 5,963 RNA–protein pairs in 25.6 ms