RNA–Protein interactions for RNA: YBL056W

PTC3, Transcript of Type 2C protein phosphatase (PP2C), yeast

Gene PTC3, Length 1,407 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTC3	YBL056W	YIL024C	P40543	189 aa		4.94	□□□□□ -1.62
PTC3	YBL056W	YPI1	P43587	155 aa		4.94	□□□□□ -1.62
PTC3	YBL056W	YMR253C	Q04835	414 aa		4.94	□□□□□ -1.62
PTC3	YBL056W	FIT2	Q08906	153 aa		4.94	□□□□□ -1.62
PTC3	YBL056W	RPL11B	Q3E757	174 aa	Predicted RBP	4.94	□□□□□ -1.62
PTC3	YBL056W	TDH1	P00360	332 aa	Known RBP	4.93	□□□□□ -1.62
PTC3	YBL056W	DDI2	P0CH63	225 aa		4.93	□□□□□ -1.62
PTC3	YBL056W	DDI3	P0CH64	225 aa		4.93	□□□□□ -1.62
PTC3	YBL056W	RNA15	P25299	296 aa	Predicted RBP	4.93	□□□□□ -1.62
PTC3	YBL056W	CAX4	P53223	239 aa		4.93	□□□□□ -1.62
PTC3	YBL056W	MRX11	Q03079	207 aa		4.93	□□□□□ -1.62
PTC3	YBL056W	ATG39	Q06159	398 aa		4.93	□□□□□ -1.62
PTC3	YBL056W	LOA1	Q06508	300 aa		4.93	□□□□□ -1.62
PTC3	YBL056W	LDS2	Q08218	356 aa		4.93	□□□□□ -1.62
PTC3	YBL056W	HSP12	P22943	109 aa	Known RBP	4.92	□□□□□ -1.62
PTC3	YBL056W	TIR2	P33890	251 aa		4.92	□□□□□ -1.62
PTC3	YBL056W	SNF11	P38956	169 aa		4.92	□□□□□ -1.62
PTC3	YBL056W	AIM24	P47127	394 aa		4.92	□□□□□ -1.62
PTC3	YBL056W	UTR5	P32630	166 aa		4.91	□□□□□ -1.62
PTC3	YBL056W	YIL077C	P40508	320 aa		4.91	□□□□□ -1.62
PTC3	YBL056W	PHS1	P40857	217 aa		4.91	□□□□□ -1.62
PTC3	YBL056W	SNO1	Q03144	224 aa		4.91	□□□□□ -1.62
PTC3	YBL056W	PCC1	Q3E833	88 aa		4.91	□□□□□ -1.62
PTC3	YBL056W	CNB1	P25296	175 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	HMX1	P32339	317 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	AFR1	P33304	620 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	YBR144C	P34215	104 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	POG1	P40473	351 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	MRPL49	P40858	161 aa	Predicted RBP	4.9	□□□□□ -1.62
PTC3	YBL056W	LCB3	P47013	409 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	YGR025W	P53216	100 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	UBC7	Q02159	165 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	YOL160W	Q08321	113 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	ATX2	Q12067	313 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	TAR1	Q8TGM6	124 aa		4.9	□□□□□ -1.62
PTC3	YBL056W	MRS1	P07266	363 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	RPS22A	P0C0W1	130 aa	Known RBP	4.89	□□□□□ -1.63
PTC3	YBL056W	SEC59	P20048	519 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	COQ3	P27680	312 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	YHR173C	P38864	112 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	MST28	P39552	234 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	HUA1	P40325	198 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	YIL163C	P40448	117 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	BNS1	P50084	137 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	MST27	P53176	234 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	TOM7	P53507	60 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	IZH1	Q03419	316 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	RAV2	Q03956	351 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	COX2	P00410	251 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	CMC1	P36064	111 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	PHD1	P36093	366 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	MBB1	P39534	108 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	CYB5	P40312	120 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	GPI2	P46961	280 aa		4.89	□□□□□ -1.63
PTC3	YBL056W	LRS4	Q04087	347 aa	Known RBP	4.89	□□□□□ -1.63
PTC3	YBL056W	MIG1	P27705	504 aa		4.88	□□□□□ -1.63
PTC3	YBL056W	LAC1	P28496	418 aa		4.88	□□□□□ -1.63
PTC3	YBL056W	SIM1	P40472	476 aa		4.88	□□□□□ -1.63
PTC3	YBL056W	TDA4	P47153	279 aa		4.88	□□□□□ -1.63
PTC3	YBL056W	VPS71	Q03433	280 aa		4.88	□□□□□ -1.63
PTC3	YBL056W	RPB3	P16370	318 aa	Known RBP	4.87	□□□□□ -1.63
PTC3	YBL056W	NTF2	P33331	125 aa	Known RBP	4.87	□□□□□ -1.63
PTC3	YBL056W	MPC2	P38857	129 aa		4.87	□□□□□ -1.63
PTC3	YBL056W	HIT1	P46973	164 aa		4.87	□□□□□ -1.63
PTC3	YBL056W	RRG8	Q06109	277 aa		4.87	□□□□□ -1.63
PTC3	YBL056W	IZH3	Q07959	543 aa		4.87	□□□□□ -1.63
PTC3	YBL056W	YPR145C-A	Q2V2P0	78 aa		4.87	□□□□□ -1.63
PTC3	YBL056W	YLR302C	O13544	120 aa		4.86	□□□□□ -1.63
PTC3	YBL056W	HTB2	P02294	131 aa		4.86	□□□□□ -1.63
PTC3	YBL056W	RPP2A	P05319	106 aa	Known RBP	4.86	□□□□□ -1.63
PTC3	YBL056W	SRP21	P32342	167 aa		4.86	□□□□□ -1.63
PTC3	YBL056W	MRPS9	P38120	278 aa		4.86	□□□□□ -1.63
PTC3	YBL056W	ECM33	P38248	429 aa	Known RBP	4.86	□□□□□ -1.63
PTC3	YBL056W	YBR090C	P38253	122 aa		4.86	□□□□□ -1.63
PTC3	YBL056W	TIM21	P53220	239 aa		4.86	□□□□□ -1.63
PTC3	YBL056W	PRM7	Q12459	698 aa		4.86	□□□□□ -1.63
PTC3	YBL056W	YNL146C-A	Q3E7Z1	64 aa		4.86	□□□□□ -1.63
PTC3	YBL056W	YOR011W-A	Q3E807	68 aa		4.86	□□□□□ -1.63
PTC3	YBL056W	ADH3	P07246	375 aa	Known RBP	4.85	□□□□□ -1.63
PTC3	YBL056W	MDM10	P18409	493 aa		4.85	□□□□□ -1.63
PTC3	YBL056W	MRPL4	P36517	319 aa		4.85	□□□□□ -1.63
PTC3	YBL056W	YIP3	P53633	176 aa		4.85	□□□□□ -1.63
PTC3	YBL056W	FYV6	P53913	173 aa		4.85	□□□□□ -1.63
PTC3	YBL056W	DAD3	P69850	94 aa		4.85	□□□□□ -1.63
PTC3	YBL056W	STP4	Q07351	490 aa		4.85	□□□□□ -1.63
PTC3	YBL056W	GEP3	Q08622	556 aa		4.85	□□□□□ -1.63
PTC3	YBL056W	MRPL20	P22354	195 aa	Predicted RBP	4.84	□□□□□ -1.63
PTC3	YBL056W	YPT10	P38146	199 aa		4.84	□□□□□ -1.63
PTC3	YBL056W	ATG8	P38182	117 aa	RIP-Chip data	4.84	□□□□□ -1.63	not detected
PTC3	YBL056W	SRP14	P38985	146 aa		4.84	□□□□□ -1.63
PTC3	YBL056W	YMR141C	P40211	102 aa		4.84	□□□□□ -1.63
PTC3	YBL056W	PRE5	P40302	234 aa	Known RBP	4.84	□□□□□ -1.63
PTC3	YBL056W	MIC26	P50087	233 aa		4.84	□□□□□ -1.63
PTC3	YBL056W	ATP19	P81451	68 aa		4.84	□□□□□ -1.63
PTC3	YBL056W	YDR274C	P87283	123 aa		4.84	□□□□□ -1.63
PTC3	YBL056W	TRI1	Q05024	226 aa		4.84	□□□□□ -1.63
PTC3	YBL056W	NAT3	Q06504	195 aa		4.84	□□□□□ -1.63
PTC3	YBL056W	YLR118C	Q12354	227 aa		4.84	□□□□□ -1.63
PTC3	YBL056W	FMP49	A0A023PZB3	126 aa		4.83	□□□□□ -1.64
PTC3	YBL056W	RPL31B	P0C2H9	113 aa	Known RBP	4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 44.8 ms