RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PDCLQ13371 301 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 BRD3Q15059 726 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 SV2CQ496J9 727 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 PKDCCQ504Y2 493 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 DNAJC24Q6P3W2 148 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 UNC93AQ86WB7 457 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 ZDHHC14Q8IZN3 488 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 OR6B3Q8NGW1 331 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 TSPYL2Q9H2G4 693 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-202ENST00000372405 FAM49BQ9NUQ9 324 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 SQORQ9Y6N5 450 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 TULP2O00295 520 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 KRIT1O00522 736 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 MYCP01106 439 aaPredicted RBP14.58□□□□□ -0.07
PTPRF-202ENST00000372405 THP07101 528 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 MYBL2P10244 700 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 SLC1A1P43005 524 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 GABRB2P47870 512 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 GSCP56915 257 aaPredicted RBP14.58□□□□□ -0.07
PTPRF-202ENST00000372405 TAS2R40P59535 323 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 MTFR1Q15390 333 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 GOLGA7BQ2TAP0 167 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 RTN4RL1Q86UN2 441 aaPredicted RBP14.58□□□□□ -0.07
PTPRF-202ENST00000372405 OSTM1Q86WC4 334 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 TTC30AQ86WT1 665 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 XYLT1Q86Y38 959 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 KLHL7Q8IXQ5 586 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 HACE1Q8IYU2 909 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 C3orf58Q8NDZ4 430 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 PAAF1Q9BRP4 392 aa14.58□□□□□ -0.07
PTPRF-202ENST00000372405 PAK6Q9NQU5 681 aaPredicted RBP14.58□□□□□ -0.07
PTPRF-202ENST00000372405 A8MXQ7 604 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 PDGFRBP09619 1106 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 TCF4P15884 667 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 CDK7P50613 346 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 RAB27AP51159 221 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 CLCNKBP51801 687 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 KCTD19Q17RG1 926 aaPredicted RBP14.58□□□□□ -0.08
PTPRF-202ENST00000372405 C8orf74Q6P047 294 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 ADAT2Q7Z6V5 191 aaKnown RBP14.58□□□□□ -0.08
PTPRF-202ENST00000372405 ZNF598Q86UK7 904 aaKnown RBP14.58□□□□□ -0.08
PTPRF-202ENST00000372405 CRYBG2Q8N1P7 616 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 RNF169Q8NCN4 708 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 APPL2Q8NEU8 664 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 UBE2Q2Q8WVN8 375 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 HNRNPLLQ8WVV9 542 aaKnown RBP14.58□□□□□ -0.08
PTPRF-202ENST00000372405 LINC01599Q8WXQ3 324 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 C18orf8Q96DM3 657 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 DDX27Q96GQ7 796 aaKnown RBP14.58□□□□□ -0.08
PTPRF-202ENST00000372405 PLEKHA4Q9H4M7 779 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 SLC38A7Q9NVC3 462 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 STRIP2Q9ULQ0 834 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 PTPN22Q9Y2R2 807 aa14.58□□□□□ -0.08
PTPRF-202ENST00000372405 TCRBV7S2A1N4TA0A589 114 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 ZSCAN5CA6NGD5 496 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-202ENST00000372405 KBTBD13C9JR72 458 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 GOLGA8SH3BPF8 625 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 RAD51CO43502 376 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 GLI1P08151 1106 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 IBSPP21815 317 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-202ENST00000372405 MAN1A1P33908 653 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 RFC1P35251 1148 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-202ENST00000372405 GNL1P36915 607 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-202ENST00000372405 RWDD2BP57060 319 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 PSMC1P62191 440 aaKnown RBP14.57□□□□□ -0.08
PTPRF-202ENST00000372405 LONRF2Q1L5Z9 754 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 GLE1Q53GS7 698 aaKnown RBP14.57□□□□□ -0.08
PTPRF-202ENST00000372405 BEND6Q5SZJ8 279 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-202ENST00000372405 TMCO3Q6UWJ1 677 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 ADGRF2Q8IZF7 708 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 JOSD2Q8TAC2 188 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 DDX47Q9H0S4 455 aaKnown RBP14.57□□□□□ -0.08
PTPRF-202ENST00000372405 RSAD1Q9HA92 442 aa14.57□□□□□ -0.08
PTPRF-202ENST00000372405 SIGLEC16A6NMB1 481 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 F8VP50 259 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 DNM1LO00429 736 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 GABBR2O75899 941 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 TUBBP07437 444 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 STILQ15468 1287 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 CCDC142Q17RM4 750 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 ARHGAP17Q68EM7 881 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 PMF1Q6P1K2 205 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 ECHDC2Q86YB7 292 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 TOP6BLQ8N6T0 577 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 MCRS1Q96EZ8 462 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 HERPUD2Q9BSE4 406 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 STIM2Q9P246 746 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 IP6K2Q9UHH9 426 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 TSC2P49815 1807 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 CASTOR2A6NHX0 329 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 CCDC188H7C350 402 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 PIK3R2O00459 728 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 PODXLO00592 558 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 CYB561D2O14569 222 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 SART1O43290 800 aaKnown RBP14.56□□□□□ -0.08
PTPRF-202ENST00000372405 HUS1O60921 280 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 POMCP01189 267 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 CCDC130P13994 396 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 WARSP23381 471 aaKnown RBP14.56□□□□□ -0.08
PTPRF-202ENST00000372405 ZNF268Q14587 947 aaPredicted RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms