RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	ECM19	Q06011	112 aa		4.61	□□□□□ -1.67
TFB4	YPR056W	ANT1	Q06497	328 aa		4.61	□□□□□ -1.67
TFB4	YPR056W	SYM1	Q06563	197 aa		4.61	□□□□□ -1.67
TFB4	YPR056W	SCP1	Q08873	200 aa		4.61	□□□□□ -1.67
TFB4	YPR056W	YCR075W-A	Q3E830	75 aa		4.61	□□□□□ -1.67
TFB4	YPR056W	YCL021W-A	Q96VH3	125 aa		4.61	□□□□□ -1.67
TFB4	YPR056W	DDP1	Q99321	188 aa	Known RBP	4.61	□□□□□ -1.67
TFB4	YPR056W	TIM9	O74700	87 aa		4.6	□□□□□ -1.67
TFB4	YPR056W	TOM40	P23644	387 aa	Known RBP	4.6	□□□□□ -1.67
TFB4	YPR056W	YAR029W	P39549	74 aa		4.6	□□□□□ -1.67
TFB4	YPR056W	YEL028W	P39989	153 aa		4.6	□□□□□ -1.67
TFB4	YPR056W	IGD1	P43598	195 aa		4.6	□□□□□ -1.67
TFB4	YPR056W	EAF6	P47128	113 aa		4.6	□□□□□ -1.67
TFB4	YPR056W	PBA1	Q05778	276 aa		4.6	□□□□□ -1.67
TFB4	YPR056W	YOR097C	Q12274	175 aa	Predicted RBP	4.6	□□□□□ -1.67
TFB4	YPR056W	GTT2	Q12390	233 aa		4.6	□□□□□ -1.67
TFB4	YPR056W	RPL9A	P05738	191 aa	Known RBP	4.59	□□□□□ -1.67
TFB4	YPR056W	RAD6	P06104	172 aa		4.59	□□□□□ -1.67
TFB4	YPR056W	SGA1	P08019	549 aa		4.59	□□□□□ -1.67
TFB4	YPR056W	DDR48	P18899	430 aa	Known RBP	4.59	□□□□□ -1.67
TFB4	YPR056W	DSK2	P48510	373 aa		4.59	□□□□□ -1.67
TFB4	YPR056W	RPL9B	P51401	191 aa	Known RBP	4.59	□□□□□ -1.67
TFB4	YPR056W	YDR274C	P87283	123 aa		4.59	□□□□□ -1.67
TFB4	YPR056W	YER078W-A	Q3E7A2	54 aa		4.59	□□□□□ -1.67
TFB4	YPR056W	ODC2	Q99297	307 aa		4.59	□□□□□ -1.67
TFB4	YPR056W	RSF2	P46974	1380 aa		4.58	□□□□□ -1.68
TFB4	YPR056W	SPT15	P13393	240 aa	Known RBP	4.58	□□□□□ -1.68
TFB4	YPR056W	NOP1	P15646	327 aa	Known RBP	4.58	□□□□□ -1.68
TFB4	YPR056W	RPB9	P27999	122 aa		4.58	□□□□□ -1.68
TFB4	YPR056W	NSA2	P40078	261 aa	Known RBP	4.58	□□□□□ -1.68
TFB4	YPR056W	BAT2	P47176	376 aa	Known RBP	4.58	□□□□□ -1.68
TFB4	YPR056W	CAX4	P53223	239 aa		4.58	□□□□□ -1.68
TFB4	YPR056W	SMD1	Q02260	146 aa	Predicted RBP	4.58	□□□□□ -1.68
TFB4	YPR056W	RCE1	Q03530	315 aa		4.58	□□□□□ -1.68
TFB4	YPR056W	MRPS8	Q03799	155 aa		4.58	□□□□□ -1.68
TFB4	YPR056W	YDR102C	Q03864	110 aa		4.58	□□□□□ -1.68
TFB4	YPR056W	YMR252C	Q04814	134 aa		4.58	□□□□□ -1.68
TFB4	YPR056W	YGL194C-A	Q2V2P6	80 aa		4.58	□□□□□ -1.68
TFB4	YPR056W	SRL3	P36167	246 aa		4.57	□□□□□ -1.68
TFB4	YPR056W	ERV15	P38312	142 aa		4.57	□□□□□ -1.68
TFB4	YPR056W	MIG3	P39943	394 aa		4.57	□□□□□ -1.68
TFB4	YPR056W	NSE4	P43124	402 aa		4.57	□□□□□ -1.68
TFB4	YPR056W	SPG1	P50088	95 aa		4.57	□□□□□ -1.68
TFB4	YPR056W	YGR164W	P53291	111 aa		4.57	□□□□□ -1.68
TFB4	YPR056W	UIP4	Q08926	304 aa		4.57	□□□□□ -1.68
TFB4	YPR056W	MET5	P47169	1442 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	DUR1,2	P32528	1835 aa	Known RBP	4.56	□□□□□ -1.68
TFB4	YPR056W	HAP3	P13434	144 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	YCR050C	P25630	102 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	YHR125W	P38831	101 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	RRT13	P40042	185 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	YER135C	P40082	130 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	RSM27	P53305	110 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	RIP-Chip
TFB4	YPR056W	RSM10	Q03201	203 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	RRT7	Q07829	113 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	YAL067W-A	Q8TGK6	75 aa		4.56	□□□□□ -1.68
TFB4	YPR056W	ESC1	Q03661	1658 aa	Known RBP	4.56	□□□□□ -1.68
TFB4	YPR056W	CUP9	P41817	306 aa		4.55	□□□□□ -1.68
TFB4	YPR056W	PAM16	P42949	149 aa		4.55	□□□□□ -1.68
TFB4	YPR056W	YNR064C	P53750	290 aa		4.55	□□□□□ -1.68
TFB4	YPR056W	KEI1	Q06346	221 aa		4.55	□□□□□ -1.68
TFB4	YPR056W	ATP20	Q12233	115 aa		4.55	□□□□□ -1.68
TFB4	YPR056W	FLO11	P08640	1367 aa		4.54	□□□□□ -1.68
TFB4	YPR056W	COX10	P21592	462 aa		4.54	□□□□□ -1.68
TFB4	YPR056W	YBL059W	P34224	193 aa		4.54	□□□□□ -1.68
TFB4	YPR056W	UMP1	P38293	148 aa		4.54	□□□□□ -1.68
TFB4	YPR056W	CTR2	P38865	189 aa		4.54	□□□□□ -1.68
TFB4	YPR056W	GAA1	P39012	614 aa		4.54	□□□□□ -1.68
TFB4	YPR056W	SNU13	P39990	126 aa	Known RBP	4.54	□□□□□ -1.68
TFB4	YPR056W	SAY1	P53324	424 aa		4.54	□□□□□ -1.68
TFB4	YPR056W	YMR103C	Q04436	120 aa		4.54	□□□□□ -1.68
TFB4	YPR056W	YMR230W-A	Q3E7B5	62 aa		4.54	□□□□□ -1.68
TFB4	YPR056W	GEA2	P39993	1459 aa	Known RBP	4.54	□□□□□ -1.68
TFB4	YPR056W	TY1B-PR2	P0C2J0	1756 aa		4.53	□□□□□ -1.68
TFB4	YPR056W	POR1	P04840	283 aa	Known RBP	4.53	□□□□□ -1.68
TFB4	YPR056W	SPC25	P40014	221 aa		4.53	□□□□□ -1.68
TFB4	YPR056W	REE1	P40893	198 aa		4.53	□□□□□ -1.68
TFB4	YPR056W	FCF1	Q05498	189 aa	Predicted RBP	4.53	□□□□□ -1.68
TFB4	YPR056W	YRF1-3	P0CX14	1859 aa		4.53	□□□□□ -1.68
TFB4	YPR056W	YRF1-7	P0CX15	1859 aa		4.53	□□□□□ -1.68
TFB4	YPR056W	YRF1-6	P53819	1859 aa		4.53	□□□□□ -1.68
TFB4	YPR056W	RAS2	P01120	322 aa	Known RBP	4.52	□□□□□ -1.69
TFB4	YPR056W	YHR130C	P38834	111 aa		4.52	□□□□□ -1.69
TFB4	YPR056W	ECO1	P43605	281 aa		4.52	□□□□□ -1.69
TFB4	YPR056W	YMR295C	Q03559	197 aa		4.52	□□□□□ -1.69
TFB4	YPR056W	LTE1	P07866	1435 aa		4.52	□□□□□ -1.69
TFB4	YPR056W	CAT8	P39113	1433 aa		4.52	□□□□□ -1.69
TFB4	YPR056W	MSW1	P04803	379 aa		4.51	□□□□□ -1.69
TFB4	YPR056W	YCR099C	P25657	155 aa		4.51	□□□□□ -1.69
TFB4	YPR056W	YIR035C	P40579	254 aa		4.51	□□□□□ -1.69
TFB4	YPR056W	LIP1	Q03579	150 aa		4.51	□□□□□ -1.69
TFB4	YPR056W	YOR376W-A	Q3E805	51 aa		4.51	□□□□□ -1.69
TFB4	YPR056W	GEA1	P47102	1408 aa	Predicted RBP	4.5	□□□□□ -1.69
TFB4	YPR056W	MDH2	P22133	377 aa		4.5	□□□□□ -1.69
TFB4	YPR056W	ARO2	P28777	376 aa	Known RBP	4.5	□□□□□ -1.69
TFB4	YPR056W	RIM9	Q04734	239 aa		4.5	□□□□□ -1.69
TFB4	YPR056W	FEX1	Q08913	375 aa		4.5	□□□□□ -1.69
TFB4	YPR056W	FEX2	Q08991	375 aa		4.5	□□□□□ -1.69
TFB4	YPR056W	RPL13A	Q12690	199 aa	Predicted RBP	4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 231.5 ms