RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	ATO3	Q12359	275 aa		3.47	□□□□□ -1.85
RRP40	YOL142W	BGL2	P15703	313 aa	Known RBP	3.46	□□□□□ -1.86
RRP40	YOL142W	GRX2	P17695	143 aa	Known RBP	3.46	□□□□□ -1.86
RRP40	YOL142W	YMR31	P19955	123 aa		3.46	□□□□□ -1.86
RRP40	YOL142W	COS8	P38723	381 aa		3.46	□□□□□ -1.86
RRP40	YOL142W	SSO2	P39926	295 aa		3.46	□□□□□ -1.86
RRP40	YOL142W	YER188W	P40103	239 aa		3.46	□□□□□ -1.86
RRP40	YOL142W	FEX1	Q08913	375 aa		3.46	□□□□□ -1.86
RRP40	YOL142W	YOL085C	Q99345	113 aa		3.46	□□□□□ -1.86
RRP40	YOL142W	RPL9A	P05738	191 aa	Known RBP	3.45	□□□□□ -1.86
RRP40	YOL142W	CKS1	P20486	150 aa	Known RBP	3.45	□□□□□ -1.86
RRP40	YOL142W	MRS4	P23500	304 aa		3.45	□□□□□ -1.86
RRP40	YOL142W	SUA5	P32579	426 aa		3.45	□□□□□ -1.86
RRP40	YOL142W	MRX11	Q03079	207 aa		3.45	□□□□□ -1.86
RRP40	YOL142W	LPP1	Q04396	274 aa		3.45	□□□□□ -1.86
RRP40	YOL142W	HRD1	Q08109	551 aa		3.45	□□□□□ -1.86
RRP40	YOL142W	YOL029C	Q08187	201 aa		3.45	□□□□□ -1.86
RRP40	YOL142W	YCT1	Q12235	531 aa		3.45	□□□□□ -1.86
RRP40	YOL142W	YOS1	Q3E834	85 aa		3.45	□□□□□ -1.86
RRP40	YOL142W	VPS63	O13549	108 aa		3.44	□□□□□ -1.86
RRP40	YOL142W	SUA7	P29055	345 aa	Predicted RBP	3.44	□□□□□ -1.86
RRP40	YOL142W	ECM31	P38122	312 aa		3.44	□□□□□ -1.86
RRP40	YOL142W	YJR056C	P47115	236 aa		3.44	□□□□□ -1.86
RRP40	YOL142W	RPL9B	P51401	191 aa	Known RBP	3.44	□□□□□ -1.86
RRP40	YOL142W	FCY1	Q12178	158 aa		3.44	□□□□□ -1.86
RRP40	YOL142W	ATG5	Q12380	294 aa		3.44	□□□□□ -1.86
RRP40	YOL142W	TFB5	Q3E7C1	72 aa	Predicted RBP	3.44	□□□□□ -1.86
RRP40	YOL142W	SEC22	P22214	214 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	ACB1	P31787	87 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	YKR045C	P36138	183 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	ERV15	P38312	142 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	RRF1	P38771	230 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	YHR138C	P38841	114 aa	Predicted RBP	3.43	□□□□□ -1.86
RRP40	YOL142W	YIR035C	P40579	254 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	YJR012C	P47087	207 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	ARP3	P47117	449 aa	Known RBP	3.43	□□□□□ -1.86
RRP40	YOL142W	VPS28	Q02767	242 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	MSA1	Q08471	629 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	PRM7	Q12459	698 aa		3.43	□□□□□ -1.86
RRP40	YOL142W	GCN3	P14741	305 aa		3.42	□□□□□ -1.86
RRP40	YOL142W	STF2	P16965	84 aa		3.42	□□□□□ -1.86
RRP40	YOL142W	SAR1	P20606	190 aa	Known RBP	3.42	□□□□□ -1.86
RRP40	YOL142W	TOM40	P23644	387 aa	Known RBP	3.42	□□□□□ -1.86
RRP40	YOL142W	SRL3	P36167	246 aa		3.42	□□□□□ -1.86
RRP40	YOL142W	RRT13	P40042	185 aa		3.42	□□□□□ -1.86
RRP40	YOL142W	RFC2	P40348	353 aa		3.42	□□□□□ -1.86
RRP40	YOL142W	YGR050C	P53231	118 aa		3.42	□□□□□ -1.86
RRP40	YOL142W	AIM45	Q12480	344 aa	Known RBP	3.42	□□□□□ -1.86
RRP40	YOL142W	PRM4	Q12498	284 aa		3.42	□□□□□ -1.86
RRP40	YOL142W	COA2	Q3E823	68 aa		3.42	□□□□□ -1.86
RRP40	YOL142W	PHO85	P17157	305 aa		3.41	□□□□□ -1.86
RRP40	YOL142W	SRY1	P36007	326 aa		3.41	□□□□□ -1.86
RRP40	YOL142W	YKL162C	P36052	402 aa		3.41	□□□□□ -1.86
RRP40	YOL142W	LST7	P53237	242 aa		3.41	□□□□□ -1.86
RRP40	YOL142W	ACT1	P60010	375 aa	Known RBP	3.41	□□□□□ -1.86
RRP40	YOL142W	EST3	Q03096	181 aa		3.41	□□□□□ -1.86
RRP40	YOL142W	RRT7	Q07829	113 aa		3.41	□□□□□ -1.86
RRP40	YOL142W	PAM18	Q07914	168 aa		3.41	□□□□□ -1.86
RRP40	YOL142W	HTB1	P02293	131 aa	Known RBP	3.4	□□□□□ -1.87
RRP40	YOL142W	INO2	P26798	304 aa		3.4	□□□□□ -1.87
RRP40	YOL142W	RAD23	P32628	398 aa	Known RBP	3.4	□□□□□ -1.87
RRP40	YOL142W	YEA6	P39953	335 aa		3.4	□□□□□ -1.87
RRP40	YOL142W	YER137C	P40083	148 aa	Known RBP	3.4	□□□□□ -1.87
RRP40	YOL142W	RPL13B	P40212	199 aa	Known RBP	3.4	□□□□□ -1.87
RRP40	YOL142W	YJR111C	P47148	283 aa	Known RBP	3.4	□□□□□ -1.87
RRP40	YOL142W	PNC1	P53184	216 aa	Known RBP	3.4	□□□□□ -1.87
RRP40	YOL142W	HCH1	P53834	153 aa		3.4	□□□□□ -1.87
RRP40	YOL142W	YMR082C	Q04276	118 aa		3.4	□□□□□ -1.87
RRP40	YOL142W	YPL264C	Q08980	353 aa		3.4	□□□□□ -1.87
RRP40	YOL142W	RPL13A	Q12690	199 aa	Predicted RBP	3.4	□□□□□ -1.87
RRP40	YOL142W	YGL258W-A	Q3E740	77 aa		3.4	□□□□□ -1.87
RRP40	YOL142W	SLM6	P38343	150 aa		3.39	□□□□□ -1.87
RRP40	YOL142W	LST8	P41318	303 aa		3.39	□□□□□ -1.87
RRP40	YOL142W	EOS1	P53938	366 aa		3.39	□□□□□ -1.87
RRP40	YOL142W	FRQ1	Q06389	190 aa		3.39	□□□□□ -1.87
RRP40	YOL142W	YNG1	Q08465	219 aa		3.39	□□□□□ -1.87
RRP40	YOL142W	YPS3	Q12303	508 aa		3.39	□□□□□ -1.87
RRP40	YOL142W	ATG31	Q12421	196 aa		3.39	□□□□□ -1.87
RRP40	YOL142W	YGL194C-A	Q2V2P6	80 aa		3.39	□□□□□ -1.87
RRP40	YOL142W	YCR025C	P25352	136 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	DAD2	P36162	133 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	COX15	P40086	486 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	AGX1	P43567	385 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	FIP1	P45976	327 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	DYN2	Q02647	92 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	YMR090W	Q04304	227 aa	Known RBP	3.38	□□□□□ -1.87
RRP40	YOL142W	SPG4	Q04438	115 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	ANT1	Q06497	328 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	PBP4	Q07362	185 aa	Known RBP	3.38	□□□□□ -1.87
RRP40	YOL142W	RAD28	Q12021	506 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	POC4	Q12245	148 aa	Predicted RBP	3.38	□□□□□ -1.87
RRP40	YOL142W	YLR146W-A	Q2V2P1	62 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	YAL067W-A	Q8TGK6	75 aa		3.38	□□□□□ -1.87
RRP40	YOL142W	YDR157W	A0A023PZE8	133 aa		3.37	□□□□□ -1.87
RRP40	YOL142W	URA5	P13298	226 aa	Known RBP	3.37	□□□□□ -1.87
RRP40	YOL142W	EMP24	P32803	203 aa	Known RBP	3.37	□□□□□ -1.87
RRP40	YOL142W	YKL102C	P34249	101 aa		3.37	□□□□□ -1.87
RRP40	YOL142W	PRY2	P36110	329 aa		3.37	□□□□□ -1.87
RRP40	YOL142W	PRS4	P38063	326 aa	Predicted RBP	3.37	□□□□□ -1.87
RRP40	YOL142W	TAD2	P47058	250 aa		3.37	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 53.3 ms