RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C SLM6P38343 150 aa-0.16□□□□□ -2.44
NIP1YMR309C MSS2P40990 351 aa-0.16□□□□□ -2.44
NIP1YMR309C UIP4Q08926 304 aa-0.16□□□□□ -2.44
NIP1YMR309C YOR381W-AQ3E804 55 aa-0.16□□□□□ -2.44
NIP1YMR309C RAD9P14737 1309 aa-0.17□□□□□ -2.44
NIP1YMR309C HYP2P23301 157 aaKnown RBP-0.17□□□□□ -2.44
NIP1YMR309C YEL014CP39999 101 aa-0.17□□□□□ -2.44
NIP1YMR309C SOL1P50278 321 aa-0.17□□□□□ -2.44
NIP1YMR309C PGA1P53896 198 aa-0.17□□□□□ -2.44
NIP1YMR309C PGA2P53903 129 aa-0.17□□□□□ -2.44
NIP1YMR309C SEN15Q04675 128 aa-0.17□□□□□ -2.44
NIP1YMR309C YDL085C-AQ3E7B7 68 aaKnown RBP-0.17□□□□□ -2.44
NIP1YMR309C CAF4P36130 643 aa-0.17□□□□□ -2.44
NIP1YMR309C ECM31P38122 312 aa-0.17□□□□□ -2.44
NIP1YMR309C CCC1P47818 322 aa-0.17□□□□□ -2.44
NIP1YMR309C ARO80Q04052 950 aa-0.17□□□□□ -2.44
NIP1YMR309C BRX1Q08235 291 aaKnown RBP-0.17□□□□□ -2.44
NIP1YMR309C YOR214CQ12282 236 aa-0.17□□□□□ -2.44
NIP1YMR309C YOR034C-AQ3E735 80 aa-0.17□□□□□ -2.44
NIP1YMR309C ARG80P07249 177 aa-0.18□□□□□ -2.44
NIP1YMR309C SPS2P08459 502 aa-0.18□□□□□ -2.44
NIP1YMR309C SPT14P32363 452 aa-0.18□□□□□ -2.44
NIP1YMR309C FMP23P38231 175 aa-0.18□□□□□ -2.44
NIP1YMR309C YEL073CP39974 107 aa-0.18□□□□□ -2.44
NIP1YMR309C HOP2P53187 214 aa-0.18□□□□□ -2.44
NIP1YMR309C GPI17Q04080 534 aa-0.18□□□□□ -2.44
NIP1YMR309C IRC21Q04772 201 aa-0.18□□□□□ -2.44
NIP1YMR309C SHH4Q06236 168 aa-0.18□□□□□ -2.44
NIP1YMR309C YPR127WQ06494 345 aa-0.18□□□□□ -2.44
NIP1YMR309C MPD1Q12404 318 aaKnown RBP-0.18□□□□□ -2.44
NIP1YMR309C SPA2P23201 1466 aaKnown RBP-0.18□□□□□ -2.44
NIP1YMR309C SNF2P22082 1703 aa-0.18□□□□□ -2.44
NIP1YMR309C HSP150P32478 413 aa-0.18□□□□□ -2.44
NIP1YMR309C YKL102CP34249 101 aa-0.18□□□□□ -2.44
NIP1YMR309C GLR1P41921 483 aaKnown RBP-0.18□□□□□ -2.44
NIP1YMR309C PAC10P48363 199 aa-0.18□□□□□ -2.44
NIP1YMR309C NOC4Q06512 552 aaPredicted RBP-0.18□□□□□ -2.44
NIP1YMR309C COA6Q3E846 104 aa-0.18□□□□□ -2.44
NIP1YMR309C ADE6P38972 1358 aaKnown RBP-0.19□□□□□ -2.44
NIP1YMR309C LAA1P39526 2014 aa-0.19□□□□□ -2.44
NIP1YMR309C GSC2P40989 1895 aa-0.19□□□□□ -2.44
NIP1YMR309C MYO1P08964 1928 aa-0.19□□□□□ -2.44
NIP1YMR309C YGL041W-AP0C5N3 154 aa-0.19□□□□□ -2.44
NIP1YMR309C AHC2P25649 128 aa-0.19□□□□□ -2.44
NIP1YMR309C CPR5P35176 225 aa-0.19□□□□□ -2.44
NIP1YMR309C FYV4P38783 130 aaPredicted RBP-0.19□□□□□ -2.44
NIP1YMR309C YHR140WP38842 239 aa-0.19□□□□□ -2.44
NIP1YMR309C NQM1P53228 333 aaPredicted RBP-0.19□□□□□ -2.44
NIP1YMR309C LIP1Q03579 150 aa-0.19□□□□□ -2.44
NIP1YMR309C GRX8Q05926 109 aa-0.19□□□□□ -2.44
NIP1YMR309C FAS2P19097 1887 aaKnown RBP-0.19□□□□□ -2.44
NIP1YMR309C QCR7P00128 127 aa-0.19□□□□□ -2.44
NIP1YMR309C SRL3P36167 246 aa-0.19□□□□□ -2.44
NIP1YMR309C FMP32P43557 207 aa-0.19□□□□□ -2.44
NIP1YMR309C FMN1Q03778 218 aa-0.19□□□□□ -2.44
NIP1YMR309C SYM1Q06563 197 aa-0.19□□□□□ -2.44
NIP1YMR309C BLM10P43583 2143 aa-0.2□□□□□ -2.44
NIP1YMR309C RPL33AP05744 107 aaKnown RBP-0.2□□□□□ -2.44
NIP1YMR309C CSH1P38287 376 aa-0.2□□□□□ -2.44
NIP1YMR309C YEL028WP39989 153 aa-0.2□□□□□ -2.44
NIP1YMR309C CMC4Q3E7A9 73 aa-0.2□□□□□ -2.44
NIP1YMR309C YCL012CQ8J0M4 134 aa-0.2□□□□□ -2.44
NIP1YMR309C BNI1P41832 1953 aa-0.2□□□□□ -2.44
NIP1YMR309C NUF2P33895 451 aa-0.21□□□□□ -2.44
NIP1YMR309C SRP102P36057 244 aaPredicted RBP-0.21□□□□□ -2.44
NIP1YMR309C YMR321CQ04898 105 aa-0.21□□□□□ -2.44
NIP1YMR309C NMA1Q06178 401 aaKnown RBP-0.21□□□□□ -2.44
NIP1YMR309C YDL241WQ07738 123 aa-0.21□□□□□ -2.44
NIP1YMR309C SHG1P38337 142 aa-0.21□□□□□ -2.44
NIP1YMR309C IPT1P38954 527 aa-0.21□□□□□ -2.44
NIP1YMR309C XPT1P47165 209 aa-0.21□□□□□ -2.44
NIP1YMR309C TTI2P47168 421 aa-0.21□□□□□ -2.44
NIP1YMR309C CGR1P53188 120 aa-0.21□□□□□ -2.44
NIP1YMR309C HPT1Q04178 221 aaKnown RBP-0.21□□□□□ -2.44
NIP1YMR309C FIT3Q08907 204 aa-0.21□□□□□ -2.44
NIP1YMR309C PEX11Q12462 236 aa-0.21□□□□□ -2.44
NIP1YMR309C RPB4P20433 221 aaPredicted RBP-0.22□□□□□ -2.44
NIP1YMR309C PEX34P25584 144 aa-0.22□□□□□ -2.44
NIP1YMR309C GLC8P41818 229 aa-0.22□□□□□ -2.44
NIP1YMR309C MVB12P42939 101 aa-0.22□□□□□ -2.44
NIP1YMR309C ATG10Q07879 167 aa-0.22□□□□□ -2.44
NIP1YMR309C CDC39P25655 2108 aaKnown RBP-0.22□□□□□ -2.44
NIP1YMR309C INO4P13902 151 aa-0.22□□□□□ -2.44
NIP1YMR309C PHO13P19881 312 aa-0.22□□□□□ -2.44
NIP1YMR309C ATG8P38182 117 aaRIP-Chip data-0.22□□□□□ -2.44not detected
NIP1YMR309C NVJ1P38881 321 aa-0.22□□□□□ -2.44
NIP1YMR309C YNL200CP40165 246 aaKnown RBP-0.22□□□□□ -2.44
NIP1YMR309C JAC1P53193 184 aa-0.22□□□□□ -2.44
NIP1YMR309C YNR064CP53750 290 aa-0.22□□□□□ -2.44
NIP1YMR309C RNH1Q04740 348 aa-0.22□□□□□ -2.44
NIP1YMR309C YPR114WQ06107 315 aa-0.22□□□□□ -2.44
NIP1YMR309C YPR153WQ06537 140 aa-0.22□□□□□ -2.44
NIP1YMR309C HUG1Q6Q5K6 68 aa-0.22□□□□□ -2.44
NIP1YMR309C YRF1-3P0CX14 1859 aa-0.22□□□□□ -2.44
NIP1YMR309C YRF1-7P0CX15 1859 aa-0.22□□□□□ -2.44
NIP1YMR309C TY4B-JP47024 1803 aa-0.22□□□□□ -2.45
NIP1YMR309C YPT31P38555 223 aaKnown RBP-0.23□□□□□ -2.45
NIP1YMR309C RCF2P53721 224 aa-0.23□□□□□ -2.45
NIP1YMR309C SNO1Q03144 224 aa-0.23□□□□□ -2.45
NIP1YMR309C PLP1Q04004 230 aa-0.23□□□□□ -2.45
Retrieved 100 of 5,963 RNA–protein pairs in 47.7 ms