RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W YCR075W-AQ3E830 75 aa2.39□□□□□ -2.03
UBP8YMR223W KTI11Q3E840 82 aa2.39□□□□□ -2.03
UBP8YMR223W HIR3P47171 1648 aa2.39□□□□□ -2.03
UBP8YMR223W PAN1P32521 1480 aa2.38□□□□□ -2.03
UBP8YMR223W KRE5P22023 1365 aa2.38□□□□□ -2.03
UBP8YMR223W ANB1P19211 157 aa2.38□□□□□ -2.03
UBP8YMR223W HSP12P22943 109 aaKnown RBP2.38□□□□□ -2.03
UBP8YMR223W SKG1P36169 355 aa2.38□□□□□ -2.03
UBP8YMR223W SDH4P37298 181 aa2.38□□□□□ -2.03
UBP8YMR223W MPM1P40364 252 aa2.38□□□□□ -2.03
UBP8YMR223W GVP36P40531 326 aaKnown RBP2.38□□□□□ -2.03
UBP8YMR223W PHS1P40857 217 aa2.38□□□□□ -2.03
UBP8YMR223W SBH1P52870 82 aa2.38□□□□□ -2.03
UBP8YMR223W YNR062CP53748 327 aa2.38□□□□□ -2.03
UBP8YMR223W API2Q04413 109 aa2.38□□□□□ -2.03
UBP8YMR223W YMR252CQ04814 134 aa2.38□□□□□ -2.03
UBP8YMR223W FCF1Q05498 189 aaPredicted RBP2.38□□□□□ -2.03
UBP8YMR223W YOL029CQ08187 201 aa2.38□□□□□ -2.03
UBP8YMR223W MYO2P19524 1574 aaKnown RBP2.38□□□□□ -2.03
UBP8YMR223W PEP1P32319 1579 aa2.38□□□□□ -2.03
UBP8YMR223W THO2P53552 1597 aaKnown RBP2.38□□□□□ -2.03
UBP8YMR223W URA5P13298 226 aaKnown RBP2.37□□□□□ -2.03
UBP8YMR223W PRE1P22141 198 aaKnown RBP2.37□□□□□ -2.03
UBP8YMR223W PEX4P29340 183 aa2.37□□□□□ -2.03
UBP8YMR223W SRL3P36167 246 aa2.37□□□□□ -2.03
UBP8YMR223W YAR029WP39549 74 aa2.37□□□□□ -2.03
UBP8YMR223W YAR068WP39564 161 aa2.37□□□□□ -2.03
UBP8YMR223W YEL028WP39989 153 aa2.37□□□□□ -2.03
UBP8YMR223W CUP9P41817 306 aa2.37□□□□□ -2.03
UBP8YMR223W YGL118CP53132 145 aa2.37□□□□□ -2.03
UBP8YMR223W SMD1Q02260 146 aaPredicted RBP2.37□□□□□ -2.03
UBP8YMR223W RSM10Q03201 203 aa2.37□□□□□ -2.03
UBP8YMR223W ANT1Q06497 328 aa2.37□□□□□ -2.03
UBP8YMR223W PST1Q12355 444 aa2.37□□□□□ -2.03
UBP8YMR223W DFM1Q12743 341 aaKnown RBP2.37□□□□□ -2.03
UBP8YMR223W YOR376W-AQ3E805 51 aa2.37□□□□□ -2.03
UBP8YMR223W UBR1P19812 1950 aa2.37□□□□□ -2.03
UBP8YMR223W TIM9O74700 87 aa2.36□□□□□ -2.03
UBP8YMR223W DDR48P18899 430 aaKnown RBP2.36□□□□□ -2.03
UBP8YMR223W COX10P21592 462 aa2.36□□□□□ -2.03
UBP8YMR223W HYP2P23301 157 aaKnown RBP2.36□□□□□ -2.03
UBP8YMR223W SFT2P38166 215 aa2.36□□□□□ -2.03
UBP8YMR223W ERV15P38312 142 aa2.36□□□□□ -2.03
UBP8YMR223W TEM1P38987 245 aa2.36□□□□□ -2.03
UBP8YMR223W FIS1P40515 155 aa2.36□□□□□ -2.03
UBP8YMR223W EMC4P53073 190 aa2.36□□□□□ -2.03
UBP8YMR223W RSM27P53305 110 aa2.36□□□□□ -2.03
UBP8YMR223W YDR274CP87283 123 aa2.36□□□□□ -2.03
UBP8YMR223W ELC1Q03071 99 aa2.36□□□□□ -2.03
UBP8YMR223W YDR102CQ03864 110 aa2.36□□□□□ -2.03
UBP8YMR223W GTT2Q12390 233 aa2.36□□□□□ -2.03
UBP8YMR223W YRF1-3P0CX14 1859 aa2.35□□□□□ -2.03
UBP8YMR223W YRF1-7P0CX15 1859 aa2.35□□□□□ -2.03
UBP8YMR223W YRF1-6P53819 1859 aa2.35□□□□□ -2.03
UBP8YMR223W YAR023CD6VPM8 179 aa2.35□□□□□ -2.03
UBP8YMR223W VMA11P32842 164 aa2.35□□□□□ -2.03
UBP8YMR223W ASP1P38986 381 aaPredicted RBP2.35□□□□□ -2.03
UBP8YMR223W TVP15Q03860 143 aa2.35□□□□□ -2.03
UBP8YMR223W UPS1Q05776 175 aa2.35□□□□□ -2.03
UBP8YMR223W YPR195CQ06594 109 aa2.35□□□□□ -2.03
UBP8YMR223W YOR097CQ12274 175 aaPredicted RBP2.35□□□□□ -2.03
UBP8YMR223W SAS5Q99314 248 aa2.35□□□□□ -2.03
UBP8YMR223W DDP1Q99321 188 aaKnown RBP2.35□□□□□ -2.03
UBP8YMR223W TY1B-PR2P0C2J0 1756 aa2.35□□□□□ -2.03
UBP8YMR223W SGA1P08019 549 aa2.34□□□□□ -2.03
UBP8YMR223W HAP3P13434 144 aa2.34□□□□□ -2.03
UBP8YMR223W YCR050CP25630 102 aa2.34□□□□□ -2.03
UBP8YMR223W RNP1P32385 249 aa2.34□□□□□ -2.03
UBP8YMR223W NSA2P40078 261 aaKnown RBP2.34□□□□□ -2.03
UBP8YMR223W YER134CP40081 178 aa2.34□□□□□ -2.03
UBP8YMR223W YER135CP40082 130 aa2.34□□□□□ -2.03
UBP8YMR223W CCS1P40202 249 aaKnown RBP2.34□□□□□ -2.03
UBP8YMR223W NSE4P43124 402 aa2.34□□□□□ -2.03
UBP8YMR223W GNA1P43577 159 aaPredicted RBP2.34□□□□□ -2.03
UBP8YMR223W GON7P46984 123 aa2.34□□□□□ -2.03
UBP8YMR223W LSM8P47093 109 aaKnown RBP2.34□□□□□ -2.03
UBP8YMR223W EAF6P47128 113 aa2.34□□□□□ -2.03
UBP8YMR223W SAY1P53324 424 aa2.34□□□□□ -2.03
UBP8YMR223W SPG3Q04398 127 aaPredicted RBP2.34□□□□□ -2.03
UBP8YMR223W YMR103CQ04436 120 aa2.34□□□□□ -2.03
UBP8YMR223W ATP20Q12233 115 aa2.34□□□□□ -2.03
UBP8YMR223W SMT3Q12306 101 aaKnown RBP2.34□□□□□ -2.03
UBP8YMR223W RPL9AP05738 191 aaKnown RBP2.34□□□□□ -2.04
UBP8YMR223W ADH3P07246 375 aaKnown RBP2.34□□□□□ -2.04
UBP8YMR223W PAM17P36147 197 aa2.34□□□□□ -2.04
UBP8YMR223W ECM34P38728 170 aa2.34□□□□□ -2.04
UBP8YMR223W CTR2P38865 189 aa2.34□□□□□ -2.04
UBP8YMR223W SNU13P39990 126 aaKnown RBP2.34□□□□□ -2.04
UBP8YMR223W RRT13P40042 185 aa2.34□□□□□ -2.04
UBP8YMR223W PAM16P42949 149 aa2.34□□□□□ -2.04
UBP8YMR223W RPL9BP51401 191 aaKnown RBP2.34□□□□□ -2.04
UBP8YMR223W RCE1Q03530 315 aa2.34□□□□□ -2.04
UBP8YMR223W RIM9Q04734 239 aa2.34□□□□□ -2.04
UBP8YMR223W SYM1Q06563 197 aa2.34□□□□□ -2.04
UBP8YMR223W ISD11Q6Q560 94 aa2.34□□□□□ -2.04
UBP8YMR223W YAL067W-AQ8TGK6 75 aa2.34□□□□□ -2.04
UBP8YMR223W ATG2P53855 1592 aa2.33□□□□□ -2.04
UBP8YMR223W FLO11P08640 1367 aa2.33□□□□□ -2.04
UBP8YMR223W POR1P04840 283 aaKnown RBP2.33□□□□□ -2.04
UBP8YMR223W RAD6P06104 172 aa2.33□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 24.7 ms