RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	THI74	Q04083	370 aa		4.11	□□□□□ -1.75
NUP116	YMR047C	ERV2	Q12284	196 aa		4.11	□□□□□ -1.75
NUP116	YMR047C	SCS22	Q6Q595	175 aa		4.11	□□□□□ -1.75
NUP116	YMR047C	ANB1	P19211	157 aa		4.11	□□□□□ -1.75
NUP116	YMR047C	MLF3	P32047	452 aa		4.11	□□□□□ -1.75
NUP116	YMR047C	YNL208W	P40159	199 aa	Known RBP	4.11	□□□□□ -1.75
NUP116	YMR047C	AIM25	P47140	327 aa		4.11	□□□□□ -1.75
NUP116	YMR047C	TEX1	P53851	422 aa	Known RBP	4.11	□□□□□ -1.75
NUP116	YMR047C	YER084W	P40057	128 aa		4.11	□□□□□ -1.75
NUP116	YMR047C	CCS1	P40202	249 aa	Known RBP	4.11	□□□□□ -1.75
NUP116	YMR047C	HMS2	P47175	358 aa		4.11	□□□□□ -1.75
NUP116	YMR047C	YMR31	P19955	123 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	YKL107W	P34251	309 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	PAN3	P36102	679 aa	Predicted RBP	4.1	□□□□□ -1.75
NUP116	YMR047C	CTF8	P38877	133 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	SUT1	P53032	299 aa	Known RBP	4.1	□□□□□ -1.75
NUP116	YMR047C	ABF2	Q02486	183 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	BET5	Q03630	159 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	ELP6	Q04868	273 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	TDA6	Q06466	467 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	YLR042C	Q07990	161 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	SPS100	P13130	326 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	TFB5	Q3E7C1	72 aa	Predicted RBP	4.1	□□□□□ -1.75
NUP116	YMR047C	RPB8	P20436	146 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	ERG4	P25340	473 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	YCR100C	P25606	316 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	SPC25	P40014	221 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	PFS2	P42841	465 aa	Known RBP	4.1	□□□□□ -1.75
NUP116	YMR047C	CWP2	P43497	92 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	SYF2	P53277	215 aa	Predicted RBP	4.1	□□□□□ -1.75
NUP116	YMR047C	MSS11	Q03825	758 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	RRS1	Q08746	203 aa	Known RBP	4.1	□□□□□ -1.75
NUP116	YMR047C	PRM3	Q08931	133 aa		4.1	□□□□□ -1.75
NUP116	YMR047C	POC4	Q12245	148 aa	Predicted RBP	4.1	□□□□□ -1.75
NUP116	YMR047C	RAS1	P01119	309 aa		4.09	□□□□□ -1.75
NUP116	YMR047C	COX9	P07255	59 aa		4.09	□□□□□ -1.75
NUP116	YMR047C	HOM6	P31116	359 aa	Known RBP	4.09	□□□□□ -1.75
NUP116	YMR047C	RPL13B	P40212	199 aa	Known RBP	4.09	□□□□□ -1.75
NUP116	YMR047C	PRE5	P40302	234 aa	Known RBP	4.09	□□□□□ -1.75
NUP116	YMR047C	BNA2	P47125	453 aa		4.09	□□□□□ -1.75
NUP116	YMR047C	RMD9	P53140	646 aa	Known RBP	4.09	□□□□□ -1.75
NUP116	YMR047C	PRM8	P53174	237 aa		4.09	□□□□□ -1.75
NUP116	YMR047C	HSK3	P69852	69 aa		4.09	□□□□□ -1.75
NUP116	YMR047C	KEI1	Q06346	221 aa		4.09	□□□□□ -1.75
NUP116	YMR047C	PIN3	Q06449	215 aa		4.09	□□□□□ -1.75
NUP116	YMR047C	YML003W	P0CF16	290 aa		4.09	□□□□□ -1.76
NUP116	YMR047C	YKR070W	P36151	352 aa	Known RBP	4.09	□□□□□ -1.76
NUP116	YMR047C	YIL059C	P40520	121 aa		4.09	□□□□□ -1.76
NUP116	YMR047C	MTL1	P53214	551 aa		4.09	□□□□□ -1.76
NUP116	YMR047C	EST3	Q03096	181 aa		4.09	□□□□□ -1.76
NUP116	YMR047C	AVO2	Q04749	426 aa		4.09	□□□□□ -1.76
NUP116	YMR047C	YDL157C	Q12082	118 aa		4.09	□□□□□ -1.76
NUP116	YMR047C	HYP2	P23301	157 aa	Known RBP	4.08	□□□□□ -1.76
NUP116	YMR047C	REC104	P33323	182 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	NSA2	P40078	261 aa	Known RBP	4.08	□□□□□ -1.76
NUP116	YMR047C	EMC5	P40540	141 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	XPT1	P47165	209 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	BNS1	P50084	137 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	OPI3	P05375	206 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	MRPL20	P22354	195 aa	Predicted RBP	4.08	□□□□□ -1.76
NUP116	YMR047C	REC114	P32841	428 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	YIL012W	P40551	113 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	ATG27	P46989	271 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	NMA1	Q06178	401 aa	Known RBP	4.08	□□□□□ -1.76
NUP116	YMR047C	ARR3	Q06598	404 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	GAT3	Q07928	141 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	PAU23	Q07987	124 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	PAU17	Q12370	124 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	SEC4	P07560	215 aa	Known RBP	4.08	□□□□□ -1.76
NUP116	YMR047C	YER190C-B	P0CX94	160 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	YEL077W-A	P0CX95	160 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	YGR296C-B	P0CX96	160 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	YPL283W-B	P0CX97	160 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	YPR204C-A	P0CX98	160 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	ARC40	P38328	384 aa	Known RBP	4.08	□□□□□ -1.76
NUP116	YMR047C	HTD2	P38790	280 aa	Known RBP	4.08	□□□□□ -1.76
NUP116	YMR047C	TEM1	P38987	245 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	YIL029C	P40538	142 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	YIR020C	P40575	100 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	CIN2	P46670	268 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	UBP8	P50102	471 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	TRI1	Q05024	226 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	HEM25	Q07534	307 aa		4.08	□□□□□ -1.76
NUP116	YMR047C	ILV5	P06168	395 aa	Known RBP	4.07	□□□□□ -1.76
NUP116	YMR047C	DLS1	P40366	167 aa		4.07	□□□□□ -1.76
NUP116	YMR047C	LCB3	P47013	409 aa		4.07	□□□□□ -1.76
NUP116	YMR047C	YPR098C	Q06089	161 aa		4.07	□□□□□ -1.76
NUP116	YMR047C	GAR1	P28007	205 aa	Known RBP	4.07	□□□□□ -1.76
NUP116	YMR047C	ASP1	P38986	381 aa	Predicted RBP	4.07	□□□□□ -1.76
NUP116	YMR047C	YND1	P40009	630 aa		4.07	□□□□□ -1.76
NUP116	YMR047C	SMM1	P53720	384 aa	Known RBP	4.07	□□□□□ -1.76
NUP116	YMR047C	RNH201	P53942	307 aa		4.07	□□□□□ -1.76
NUP116	YMR047C	SED1	Q01589	338 aa		4.07	□□□□□ -1.76
NUP116	YMR047C	FCY1	Q12178	158 aa		4.07	□□□□□ -1.76
NUP116	YMR047C	TIR4	Q12218	487 aa	Predicted RBP	4.07	□□□□□ -1.76
NUP116	YMR047C	SIR2	P06700	562 aa		4.06	□□□□□ -1.76
NUP116	YMR047C	COX10	P21592	462 aa		4.06	□□□□□ -1.76
NUP116	YMR047C	FUN19	P28003	413 aa	Predicted RBP	4.06	□□□□□ -1.76
NUP116	YMR047C	SHB17	P36136	271 aa	Known RBP	4.06	□□□□□ -1.76
NUP116	YMR047C	YHR138C	P38841	114 aa	Predicted RBP	4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 126.6 ms