RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W DGK1Q12382 290 aa3.61□□□□□ -1.83
SSH4YKL124W SUS1Q6WNK7 96 aa3.61□□□□□ -1.83
SSH4YKL124W PHO85P17157 305 aa3.6□□□□□ -1.83
SSH4YKL124W TIR2P33890 251 aa3.6□□□□□ -1.83
SSH4YKL124W MBA1P38300 278 aa3.6□□□□□ -1.83
SSH4YKL124W TRS20P38334 175 aa3.6□□□□□ -1.83
SSH4YKL124W GLE2P40066 365 aa3.6□□□□□ -1.83
SSH4YKL124W YJR015WP47090 510 aa3.6□□□□□ -1.83
SSH4YKL124W UBP8P50102 471 aa3.6□□□□□ -1.83
SSH4YKL124W ARO8P53090 500 aaKnown RBP3.6□□□□□ -1.83
SSH4YKL124W VHT1P53241 593 aa3.6□□□□□ -1.83
SSH4YKL124W MIX17Q03667 156 aa3.6□□□□□ -1.83
SSH4YKL124W UTP23Q12339 254 aaKnown RBP3.6□□□□□ -1.83
SSH4YKL124W SAL1D6W196 494 aa3.59□□□□□ -1.83
SSH4YKL124W RAD52P06778 471 aaKnown RBP3.59□□□□□ -1.83
SSH4YKL124W RPS18AP0CX55 146 aaKnown RBP3.59□□□□□ -1.83
SSH4YKL124W RPS18BP0CX56 146 aaPredicted RBP3.59□□□□□ -1.83
SSH4YKL124W GCN3P14741 305 aa3.59□□□□□ -1.83
SSH4YKL124W ERS1P17261 260 aa3.59□□□□□ -1.83
SSH4YKL124W SEC59P20048 519 aa3.59□□□□□ -1.83
SSH4YKL124W TOM40P23644 387 aaKnown RBP3.59□□□□□ -1.83
SSH4YKL124W PMU1P36069 295 aa3.59□□□□□ -1.83
SSH4YKL124W MRPL28P36527 147 aa3.59□□□□□ -1.83
SSH4YKL124W SWD3P38123 315 aa3.59□□□□□ -1.83
SSH4YKL124W ECM33P38248 429 aaKnown RBP3.59□□□□□ -1.83
SSH4YKL124W CPR8P53728 308 aa3.59□□□□□ -1.83
SSH4YKL124W PDR17P53844 350 aa3.59□□□□□ -1.83
SSH4YKL124W BUD25P85052 153 aa3.59□□□□□ -1.83
SSH4YKL124W APS2Q00381 147 aa3.59□□□□□ -1.83
SSH4YKL124W FIT1Q04433 528 aa3.59□□□□□ -1.83
SSH4YKL124W YGR035W-AQ45U48 73 aa3.59□□□□□ -1.83
SSH4YKL124W YER175W-AQ8TGU4 54 aa3.59□□□□□ -1.83
SSH4YKL124W ODC2Q99297 307 aa3.59□□□□□ -1.83
SSH4YKL124W RPL31AP0C2H8 113 aaKnown RBP3.58□□□□□ -1.84
SSH4YKL124W YER190C-BP0CX94 160 aa3.58□□□□□ -1.84
SSH4YKL124W YEL077W-AP0CX95 160 aa3.58□□□□□ -1.84
SSH4YKL124W YGR296C-BP0CX96 160 aa3.58□□□□□ -1.84
SSH4YKL124W YPL283W-BP0CX97 160 aa3.58□□□□□ -1.84
SSH4YKL124W YPR204C-AP0CX98 160 aa3.58□□□□□ -1.84
SSH4YKL124W YFL068WP0CX99 160 aa3.58□□□□□ -1.84
SSH4YKL124W YLL066W-AP0CY00 160 aa3.58□□□□□ -1.84
SSH4YKL124W YLL067W-AP0CY01 160 aa3.58□□□□□ -1.84
SSH4YKL124W CDC50P25656 391 aa3.58□□□□□ -1.84
SSH4YKL124W ERG2P32352 222 aa3.58□□□□□ -1.84
SSH4YKL124W SRY1P36007 326 aa3.58□□□□□ -1.84
SSH4YKL124W RPF1P38805 295 aaKnown RBP3.58□□□□□ -1.84
SSH4YKL124W YIL060WP40519 144 aa3.58□□□□□ -1.84
SSH4YKL124W HAC1P41546 238 aa3.58□□□□□ -1.84
SSH4YKL124W YJR012CP47087 207 aa3.58□□□□□ -1.84
SSH4YKL124W YIP1P53039 248 aa3.58□□□□□ -1.84
SSH4YKL124W FMP48P53233 369 aa3.58□□□□□ -1.84
SSH4YKL124W TMA23Q03525 211 aa3.58□□□□□ -1.84
SSH4YKL124W KEI1Q06346 221 aa3.58□□□□□ -1.84
SSH4YKL124W TFC7Q12415 435 aa3.58□□□□□ -1.84
SSH4YKL124W MRS1P07266 363 aa3.58□□□□□ -1.84
SSH4YKL124W ACB1P31787 87 aa3.58□□□□□ -1.84
SSH4YKL124W UTP30P36144 274 aaKnown RBP3.58□□□□□ -1.84
SSH4YKL124W HTD2P38790 280 aaKnown RBP3.58□□□□□ -1.84
SSH4YKL124W YFL015CP43578 164 aa3.58□□□□□ -1.84
SSH4YKL124W YGL262WP53054 175 aa3.58□□□□□ -1.84
SSH4YKL124W SMX3P54999 86 aaPredicted RBP3.58□□□□□ -1.84
SSH4YKL124W DAD3P69850 94 aa3.58□□□□□ -1.84
SSH4YKL124W RAV2Q03956 351 aa3.58□□□□□ -1.84
SSH4YKL124W PRM4Q12498 284 aa3.58□□□□□ -1.84
SSH4YKL124W YOR192C-CQ3E736 78 aa3.58□□□□□ -1.84
SSH4YKL124W YLR365WQ7LIF2 110 aa3.58□□□□□ -1.84
SSH4YKL124W LSB5P25369 354 aa3.57□□□□□ -1.84
SSH4YKL124W RPB7P34087 171 aa3.57□□□□□ -1.84
SSH4YKL124W NNK1P36003 928 aa3.57□□□□□ -1.84
SSH4YKL124W PAN3P36102 679 aaPredicted RBP3.57□□□□□ -1.84
SSH4YKL124W YCR041WP37265 110 aa3.57□□□□□ -1.84
SSH4YKL124W YPT31P38555 223 aaKnown RBP3.57□□□□□ -1.84
SSH4YKL124W TOS8P53147 276 aa3.57□□□□□ -1.84
SSH4YKL124W ERV29P53337 310 aa3.57□□□□□ -1.84
SSH4YKL124W YLR179CQ06252 201 aaKnown RBP3.57□□□□□ -1.84
SSH4YKL124W MCH1Q07376 486 aa3.57□□□□□ -1.84
SSH4YKL124W MED7Q08278 222 aa3.57□□□□□ -1.84
SSH4YKL124W YPL257WQ08974 193 aa3.57□□□□□ -1.84
SSH4YKL124W SME1Q12330 94 aaPredicted RBP3.57□□□□□ -1.84
SSH4YKL124W YLR415CO13578 112 aa3.56□□□□□ -1.84
SSH4YKL124W PRE1P22141 198 aaKnown RBP3.56□□□□□ -1.84
SSH4YKL124W AGA2P32781 87 aa3.56□□□□□ -1.84
SSH4YKL124W ZRT1P32804 376 aa3.56□□□□□ -1.84
SSH4YKL124W PEX22P39718 180 aa3.56□□□□□ -1.84
SSH4YKL124W UBC12P52491 188 aa3.56□□□□□ -1.84
SSH4YKL124W MST27P53176 234 aa3.56□□□□□ -1.84
SSH4YKL124W ODC1Q03028 310 aa3.56□□□□□ -1.84
SSH4YKL124W CNL1Q06333 122 aa3.56□□□□□ -1.84
SSH4YKL124W YOR292CQ08743 309 aa3.56□□□□□ -1.84
SSH4YKL124W FCF2Q12035 217 aaPredicted RBP3.56□□□□□ -1.84
SSH4YKL124W YGL194C-AQ2V2P6 80 aa3.56□□□□□ -1.84
SSH4YKL124W YPR108W-AQ3E7B3 70 aa3.56□□□□□ -1.84
SSH4YKL124W IGO2Q9P305 131 aa3.56□□□□□ -1.84
SSH4YKL124W VAR1P02381 398 aa3.56□□□□□ -1.84
SSH4YKL124W MRPL27P36526 146 aaPredicted RBP3.56□□□□□ -1.84
SSH4YKL124W LST7P53237 242 aa3.56□□□□□ -1.84
SSH4YKL124W HHO1P53551 258 aa3.56□□□□□ -1.84
SSH4YKL124W MRX11Q03079 207 aa3.56□□□□□ -1.84
SSH4YKL124W LPP1Q04396 274 aa3.56□□□□□ -1.84
SSH4YKL124W SPG4Q04438 115 aa3.56□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 57.1 ms