RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	NIP7	Q08962	181 aa	Known RBP	3	□□□□□ -1.93
NUP85	YJR042W	VPS68	Q12016	184 aa		3	□□□□□ -1.93
NUP85	YJR042W	PSF1	Q12488	208 aa		3	□□□□□ -1.93
NUP85	YJR042W	YOL162W	P0CF19	215 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	STP22	P25604	385 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	OMA1	P36163	345 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	YNL200C	P40165	246 aa	Known RBP	2.99	□□□□□ -1.93
NUP85	YJR042W	YIL152W	P40455	235 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	YIL012W	P40551	113 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	CRH1	P53301	507 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	COF1	Q03048	143 aa	Known RBP	2.99	□□□□□ -1.93
NUP85	YJR042W	RAV2	Q03956	351 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	HIS3	P06633	220 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	COX9	P07255	59 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	IMP1	P28627	190 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	2.99	□□□□□ -1.93	not detected
NUP85	YJR042W	MSA2	P36157	363 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	YND1	P40009	630 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	SKI6	P46948	246 aa	Predicted RBP	2.99	□□□□□ -1.93
NUP85	YJR042W	TTI2	P47168	421 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	FEX2	Q08991	375 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	ATG41	Q12048	136 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	TDA8	Q6B2U8	126 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	YHR213W-A	Q8TGT4	77 aa		2.99	□□□□□ -1.93
NUP85	YJR042W	HHF1	P02309	103 aa	Known RBP	2.98	□□□□□ -1.93
NUP85	YJR042W	FPR1	P20081	114 aa	Known RBP	2.98	□□□□□ -1.93
NUP85	YJR042W	RPB5	P20434	215 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	CKS1	P20486	150 aa	Known RBP	2.98	□□□□□ -1.93
NUP85	YJR042W	MAG1	P22134	296 aa	Known RBP	2.98	□□□□□ -1.93
NUP85	YJR042W	LDS1	P31379	325 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	PAU24	P38155	120 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	YPL073C	P40323	161 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	LPP1	Q04396	274 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	YDL211C	Q12121	372 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	SPC3	Q12133	184 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	FYV7	Q12247	151 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	ATP14	Q12349	124 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	SLO1	Q3E784	85 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	TAD3	Q9URQ3	322 aa		2.98	□□□□□ -1.93
NUP85	YJR042W	PAU2	P32612	120 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	YKR070W	P36151	352 aa	Known RBP	2.97	□□□□□ -1.93
NUP85	YJR042W	HTD2	P38790	280 aa	Known RBP	2.97	□□□□□ -1.93
NUP85	YJR042W	RFC2	P40348	353 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	PGU1	P47180	361 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	RPS12	P48589	143 aa	Known RBP	2.97	□□□□□ -1.93
NUP85	YJR042W	VPS71	Q03433	280 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	YDR391C	Q04170	232 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	ATG10	Q07879	167 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	YPL162C	Q12042	273 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	YER078W-A	Q3E7A2	54 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	SUI1	P32911	108 aa	Known RBP	2.97	□□□□□ -1.93
NUP85	YJR042W	YOR062C	P36025	268 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	PTH1	P38876	190 aa	Known RBP	2.97	□□□□□ -1.93
NUP85	YJR042W	YFR054C	P43622	192 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	YJL028W	P47062	111 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	YGL088W	P53151	121 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	BOR1	P53838	576 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	YDR415C	Q04033	374 aa	Predicted RBP	2.97	□□□□□ -1.93
NUP85	YJR042W	YPS3	Q12303	508 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	DGK1	Q12382	290 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	TSC3	Q3E790	80 aa		2.97	□□□□□ -1.93
NUP85	YJR042W	CPR1	P14832	162 aa	Known RBP	2.96	□□□□□ -1.94
NUP85	YJR042W	CDC43	P18898	376 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	RPB9	P27999	122 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	YBL010C	P32788	280 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	SFC1	P33303	322 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	RPF1	P38805	295 aa	Known RBP	2.96	□□□□□ -1.94
NUP85	YJR042W	MOB1	P40484	314 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	SNO3	P43544	222 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	DOC1	P53068	250 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	SAY1	P53324	424 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	DIG2	Q03373	323 aa	Known RBP	2.96	□□□□□ -1.94
NUP85	YJR042W	ECM19	Q06011	112 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	KEI1	Q06346	221 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	NAT3	Q06504	195 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	COS8	P38723	381 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	DLS1	P40366	167 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	TIR3	P40552	269 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	PAM16	P42949	149 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	HHT1	P61830	136 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	YMR252C	Q04814	134 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	PRP11	Q07350	266 aa	Predicted RBP	2.96	□□□□□ -1.94
NUP85	YJR042W	MCP1	Q12106	302 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	YGL194C-A	Q2V2P6	80 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	NAG1	Q8TGN9	163 aa		2.96	□□□□□ -1.94
NUP85	YJR042W	REP2	P03872	296 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	ERG2	P32352	222 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	YBR220C	P38318	560 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	FYV4	P38783	130 aa	Predicted RBP	2.95	□□□□□ -1.94
NUP85	YJR042W	CNL1	Q06333	122 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	YCL001W-B	Q96VH2	84 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	PBI2	P0CT04	75 aa	Known RBP	2.95	□□□□□ -1.94
NUP85	YJR042W	ATP15	P21306	62 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	MRP17	P28778	131 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	GLR1	P41921	483 aa	Known RBP	2.95	□□□□□ -1.94
NUP85	YJR042W	OST2	P46964	130 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	SDH7	Q04401	133 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	MCH1	Q07376	486 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	YOR385W	Q08909	290 aa		2.95	□□□□□ -1.94
NUP85	YJR042W	RPB3	P16370	318 aa	Known RBP	2.94	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 84.2 ms