RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W CTA1P15202 515 aa6.87□□□□□ -1.31
UFD1YGR048W ERG2P32352 222 aa6.87□□□□□ -1.31
UFD1YGR048W TIM12P32830 109 aa6.87□□□□□ -1.31
UFD1YGR048W SGE1P33335 543 aa6.87□□□□□ -1.31
UFD1YGR048W PAM17P36147 197 aa6.87□□□□□ -1.31
UFD1YGR048W ARP3P47117 449 aaKnown RBP6.87□□□□□ -1.31
UFD1YGR048W ARC18Q05933 178 aaKnown RBP6.87□□□□□ -1.31
UFD1YGR048W DGA1Q08650 418 aa6.87□□□□□ -1.31
UFD1YGR048W YPL264CQ08980 353 aa6.87□□□□□ -1.31
UFD1YGR048W CSR2Q12734 1121 aa6.87□□□□□ -1.31
UFD1YGR048W YKL023C-AQ2V2P3 75 aa6.87□□□□□ -1.31
UFD1YGR048W HEM4P06174 275 aa6.86□□□□□ -1.31
UFD1YGR048W RPL27AP0C2H6 136 aaKnown RBP6.86□□□□□ -1.31
UFD1YGR048W RPL27BP0C2H7 136 aaKnown RBP6.86□□□□□ -1.31
UFD1YGR048W YIL089WP40500 205 aa6.86□□□□□ -1.31
UFD1YGR048W TGL2P54857 326 aa6.86□□□□□ -1.31
UFD1YGR048W YMR210WQ03649 449 aa6.86□□□□□ -1.31
UFD1YGR048W DIC1Q06143 298 aa6.86□□□□□ -1.31
UFD1YGR048W YPR064WQ12492 139 aa6.86□□□□□ -1.31
UFD1YGR048W FLO9P39712 1322 aa6.85□□□□□ -1.31
UFD1YGR048W RPS13P05756 151 aaKnown RBP6.85□□□□□ -1.31
UFD1YGR048W ERG8P24521 451 aa6.85□□□□□ -1.31
UFD1YGR048W ERV1P27882 189 aa6.85□□□□□ -1.31
UFD1YGR048W YER085CP40058 173 aa6.85□□□□□ -1.31
UFD1YGR048W YJR096WP47137 282 aa6.85□□□□□ -1.31
UFD1YGR048W SCS3P53012 380 aa6.85□□□□□ -1.31
UFD1YGR048W POC4Q12245 148 aaPredicted RBP6.85□□□□□ -1.31
UFD1YGR048W JID1Q12350 301 aa6.85□□□□□ -1.31
UFD1YGR048W HMRA1P0CY11 126 aa6.84□□□□□ -1.31
UFD1YGR048W KRE1P17260 313 aa6.84□□□□□ -1.31
UFD1YGR048W DFG10P40526 253 aa6.84□□□□□ -1.31
UFD1YGR048W YIP3P53633 176 aa6.84□□□□□ -1.31
UFD1YGR048W SWT21P53873 357 aaPredicted RBP6.84□□□□□ -1.31
UFD1YGR048W UBC7Q02159 165 aa6.84□□□□□ -1.31
UFD1YGR048W YPL039WQ03080 316 aa6.84□□□□□ -1.31
UFD1YGR048W YER076CP40049 302 aa6.83□□□□□ -1.32
UFD1YGR048W YDL186WP48568 277 aa6.83□□□□□ -1.32
UFD1YGR048W BRP1P53194 125 aa6.83□□□□□ -1.32
UFD1YGR048W CPD1P53314 239 aa6.83□□□□□ -1.32
UFD1YGR048W CRZ1P53968 678 aa6.83□□□□□ -1.32
UFD1YGR048W NUP53Q03790 475 aa6.83□□□□□ -1.32
UFD1YGR048W TAD3Q9URQ3 322 aa6.83□□□□□ -1.32
UFD1YGR048W RAD6P06104 172 aa6.82□□□□□ -1.32
UFD1YGR048W CYC3P06182 269 aa6.82□□□□□ -1.32
UFD1YGR048W RPS28BP0C0X0 67 aaKnown RBP6.82□□□□□ -1.32
UFD1YGR048W CUP2P15315 225 aa6.82□□□□□ -1.32
UFD1YGR048W CPT1P17898 393 aa6.82□□□□□ -1.32
UFD1YGR048W QRI5P32344 111 aa6.82□□□□□ -1.32
UFD1YGR048W RPB7P34087 171 aa6.82□□□□□ -1.32
UFD1YGR048W YBL059WP34224 193 aa6.82□□□□□ -1.32
UFD1YGR048W MIC12P38341 106 aa6.82□□□□□ -1.32
UFD1YGR048W TIF34P40217 347 aaKnown RBP6.82□□□□□ -1.32
UFD1YGR048W YGR269WP40326 108 aa6.82□□□□□ -1.32
UFD1YGR048W SHR5P41912 237 aa6.82□□□□□ -1.32
UFD1YGR048W YFR020WP43600 232 aa6.82□□□□□ -1.32
UFD1YGR048W TDA4P47153 279 aa6.82□□□□□ -1.32
UFD1YGR048W POP3P53833 195 aaPredicted RBP6.82□□□□□ -1.32
UFD1YGR048W POM34Q12445 299 aa6.82□□□□□ -1.32
UFD1YGR048W RPS28AQ3E7X9 67 aaPredicted RBP6.82□□□□□ -1.32
UFD1YGR048W YBR121C-AP0C5L4 52 aa6.81□□□□□ -1.32
UFD1YGR048W PDE1P22434 369 aa6.81□□□□□ -1.32
UFD1YGR048W CPR2P23285 205 aa6.81□□□□□ -1.32
UFD1YGR048W NHP2P32495 156 aaPredicted RBP6.81□□□□□ -1.32
UFD1YGR048W PRS4P38063 326 aaPredicted RBP6.81□□□□□ -1.32
UFD1YGR048W YBR090CP38253 122 aa6.81□□□□□ -1.32
UFD1YGR048W OM14P38325 134 aa6.81□□□□□ -1.32
UFD1YGR048W YGP1P38616 354 aaKnown RBP6.81□□□□□ -1.32
UFD1YGR048W MPP6P53725 186 aaPredicted RBP6.81□□□□□ -1.32
UFD1YGR048W HRT1Q08273 121 aa6.81□□□□□ -1.32
UFD1YGR048W OPI3P05375 206 aa6.8□□□□□ -1.32
UFD1YGR048W MSI1P13712 422 aa6.8□□□□□ -1.32
UFD1YGR048W MRPL20P22354 195 aaPredicted RBP6.8□□□□□ -1.32
UFD1YGR048W PAD1P33751 242 aaKnown RBP RIP-Chip data6.8□□□□□ -1.32not detected
UFD1YGR048W YPT10P38146 199 aa6.8□□□□□ -1.32
UFD1YGR048W SNF11P38956 169 aa6.8□□□□□ -1.32
UFD1YGR048W YNL200CP40165 246 aaKnown RBP6.8□□□□□ -1.32
UFD1YGR048W SAS2P40963 338 aa6.8□□□□□ -1.32
UFD1YGR048W CTK2P46962 323 aa6.8□□□□□ -1.32
UFD1YGR048W YJL118WP47022 219 aa6.8□□□□□ -1.32
UFD1YGR048W BRR6P53062 197 aa6.8□□□□□ -1.32
UFD1YGR048W PIR1Q03178 341 aa6.8□□□□□ -1.32
UFD1YGR048W YLR365WQ7LIF2 110 aa6.8□□□□□ -1.32
UFD1YGR048W TIR2P33890 251 aa6.79□□□□□ -1.32
UFD1YGR048W YIL163CP40448 117 aa6.79□□□□□ -1.32
UFD1YGR048W GZF3P42944 551 aaKnown RBP6.79□□□□□ -1.32
UFD1YGR048W GEP7P53171 287 aa6.79□□□□□ -1.32
UFD1YGR048W ERG13P54839 491 aaKnown RBP6.79□□□□□ -1.32
UFD1YGR048W YMR007WQ03675 126 aa6.79□□□□□ -1.32
UFD1YGR048W YFH1Q07540 174 aa6.79□□□□□ -1.32
UFD1YGR048W PAM18Q07914 168 aa6.79□□□□□ -1.32
UFD1YGR048W YOL029CQ08187 201 aa6.79□□□□□ -1.32
UFD1YGR048W AYT1Q12226 474 aa6.79□□□□□ -1.32
UFD1YGR048W YDL180WQ12301 547 aa6.79□□□□□ -1.32
UFD1YGR048W YPL229WQ99395 206 aa6.79□□□□□ -1.32
UFD1YGR048W YER039C-AP0CD97 72 aa6.78□□□□□ -1.32
UFD1YGR048W YLL053CP0CD98 152 aa6.78□□□□□ -1.32
UFD1YGR048W STE18P18852 110 aa6.78□□□□□ -1.32
UFD1YGR048W YKL044WP36092 106 aa6.78□□□□□ -1.32
UFD1YGR048W YBL112CQ3E7Y4 105 aa6.78□□□□□ -1.32
UFD1YGR048W YLR415CO13578 112 aa6.77□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 150.8 ms