RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	ICS2	P38284	255 aa		4.97	□□□□□ -1.61
RPT3	YDR394W	IMD2	P38697	523 aa	Known RBP	4.97	□□□□□ -1.61
RPT3	YDR394W	YAR068W	P39564	161 aa		4.97	□□□□□ -1.61
RPT3	YDR394W	IRC22	P40006	225 aa		4.97	□□□□□ -1.61
RPT3	YDR394W	GET2	P40056	285 aa		4.97	□□□□□ -1.61
RPT3	YDR394W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
RPT3	YDR394W	YGL185C	P53100	379 aa		4.97	□□□□□ -1.61
RPT3	YDR394W	LOA1	Q06508	300 aa		4.97	□□□□□ -1.61
RPT3	YDR394W	STP4	Q07351	490 aa		4.97	□□□□□ -1.61
RPT3	YDR394W	MCH1	Q07376	486 aa		4.97	□□□□□ -1.61
RPT3	YDR394W	MRS3	P10566	314 aa		4.96	□□□□□ -1.62
RPT3	YDR394W	FRS1	P15624	595 aa	Known RBP	4.96	□□□□□ -1.62
RPT3	YDR394W	BGL2	P15703	313 aa	Known RBP	4.96	□□□□□ -1.62
RPT3	YDR394W	DAL80	P26343	269 aa		4.96	□□□□□ -1.62
RPT3	YDR394W	SPC29	P33419	253 aa		4.96	□□□□□ -1.62
RPT3	YDR394W	YKL075C	P36083	450 aa		4.96	□□□□□ -1.62
RPT3	YDR394W	MRPL28	P36527	147 aa		4.96	□□□□□ -1.62
RPT3	YDR394W	YGP1	P38616	354 aa	Known RBP	4.96	□□□□□ -1.62
RPT3	YDR394W	CYT2	Q00873	224 aa		4.96	□□□□□ -1.62
RPT3	YDR394W	CUE4	Q04201	117 aa	Predicted RBP	4.96	□□□□□ -1.62
RPT3	YDR394W	YTH1	Q06102	208 aa	Predicted RBP	4.96	□□□□□ -1.62
RPT3	YDR394W	YOR029W	Q12243	111 aa		4.96	□□□□□ -1.62
RPT3	YDR394W	PAA1	Q12447	191 aa	Known RBP	4.96	□□□□□ -1.62
RPT3	YDR394W	COA6	Q3E846	104 aa		4.96	□□□□□ -1.62
RPT3	YDR394W	YBR182C-A	Q8TGU6	64 aa		4.96	□□□□□ -1.62
RPT3	YDR394W	YLR415C	O13578	112 aa		4.95	□□□□□ -1.62
RPT3	YDR394W	PIS1	P06197	220 aa	Known RBP	4.95	□□□□□ -1.62
RPT3	YDR394W	SRP21	P32342	167 aa		4.95	□□□□□ -1.62
RPT3	YDR394W	RAD23	P32628	398 aa	Known RBP	4.95	□□□□□ -1.62
RPT3	YDR394W	RPS0A	P32905	252 aa	Known RBP	4.95	□□□□□ -1.62
RPT3	YDR394W	MIA40	P36046	403 aa		4.95	□□□□□ -1.62
RPT3	YDR394W	YFL015C	P43578	164 aa		4.95	□□□□□ -1.62
RPT3	YDR394W	HIT1	P46973	164 aa		4.95	□□□□□ -1.62
RPT3	YDR394W	DSK2	P48510	373 aa		4.95	□□□□□ -1.62
RPT3	YDR394W	POS5	Q06892	414 aa		4.95	□□□□□ -1.62
RPT3	YDR394W	LDS2	Q08218	356 aa		4.95	□□□□□ -1.62
RPT3	YDR394W	SMT3	Q12306	101 aa	Known RBP	4.95	□□□□□ -1.62
RPT3	YDR394W	DCN1	Q12395	269 aa		4.95	□□□□□ -1.62
RPT3	YDR394W	HTB1	P02293	131 aa	Known RBP	4.94	□□□□□ -1.62
RPT3	YDR394W	HSP12	P22943	109 aa	Known RBP	4.94	□□□□□ -1.62
RPT3	YDR394W	PMU1	P36069	295 aa		4.94	□□□□□ -1.62
RPT3	YDR394W	YBL071C	P38185	102 aa		4.94	□□□□□ -1.62
RPT3	YDR394W	GPI18	P38211	433 aa		4.94	□□□□□ -1.62
RPT3	YDR394W	ECM14	P38836	430 aa		4.94	□□□□□ -1.62
RPT3	YDR394W	YER121W	P40076	114 aa		4.94	□□□□□ -1.62
RPT3	YDR394W	YHP1	Q04116	353 aa		4.94	□□□□□ -1.62
RPT3	YDR394W	NAT3	Q06504	195 aa		4.94	□□□□□ -1.62
RPT3	YDR394W	ARR2	Q06597	130 aa		4.94	□□□□□ -1.62
RPT3	YDR394W	YMR316C-A	I2HB70	103 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	YGL010W	P25338	174 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	RPS2	P25443	254 aa	Known RBP	4.93	□□□□□ -1.62
RPT3	YDR394W	SUA7	P29055	345 aa	Predicted RBP	4.93	□□□□□ -1.62
RPT3	YDR394W	IES6	P32617	166 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	ADH5	P38113	351 aa	Known RBP	4.93	□□□□□ -1.62
RPT3	YDR394W	CSH1	P38287	376 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	BDH1	P39714	382 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	LSM4	P40070	187 aa	Known RBP	4.93	□□□□□ -1.62
RPT3	YDR394W	ERV14	P53173	138 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	YNR064C	P53750	290 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	STD1	Q02794	444 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	MIX17	Q03667	156 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	YOR105W	Q08504	108 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	YDL009C	Q12210	107 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	TMA17	Q12513	150 aa		4.93	□□□□□ -1.62
RPT3	YDR394W	ILV5	P06168	395 aa	Known RBP	4.92	□□□□□ -1.62
RPT3	YDR394W	YHR173C	P38864	112 aa		4.92	□□□□□ -1.62
RPT3	YDR394W	CTR2	P38865	189 aa		4.92	□□□□□ -1.62
RPT3	YDR394W	SRP14	P38985	146 aa		4.92	□□□□□ -1.62
RPT3	YDR394W	LST8	P41318	303 aa		4.92	□□□□□ -1.62
RPT3	YDR394W	YJL163C	P46996	555 aa		4.92	□□□□□ -1.62
RPT3	YDR394W	YGR149W	P48236	432 aa		4.92	□□□□□ -1.62
RPT3	YDR394W	CPD1	P53314	239 aa		4.92	□□□□□ -1.62
RPT3	YDR394W	ATP19	P81451	68 aa		4.92	□□□□□ -1.62
RPT3	YDR394W	SOD1	P00445	154 aa	Known RBP	4.91	□□□□□ -1.62
RPT3	YDR394W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
RPT3	YDR394W	HMRA1	P0CY11	126 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	YIP1	P53039	248 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	YGR018C	P53211	109 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	YNR071C	P53757	342 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	MRX11	Q03079	207 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	SDH7	Q04401	133 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	SNA4	Q07549	140 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	IRC25	Q07951	179 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	RKI1	Q12189	258 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	GEP5	Q12393	293 aa		4.91	□□□□□ -1.62
RPT3	YDR394W	DIF1	O13577	133 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	YCR022C	P25620	114 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	PHD1	P36093	366 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	DAD2	P36162	133 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	DOG2	P38773	246 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	DOG1	P38774	246 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	RPB11	P38902	120 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	YIL163C	P40448	117 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	SBH2	P52871	88 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	OCA2	P53949	197 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	FIT2	Q08906	153 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	YCL048W-A	Q2V2Q2	79 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	YNR034W-A	Q3E841	98 aa		4.9	□□□□□ -1.63
RPT3	YDR394W	COX2	P00410	251 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	POR1	P04840	283 aa	Known RBP	4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 88.7 ms