RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 SHH3Q04487 196 aa7.23□□□□□ -1.25
LSR1LSR1 TRI1Q05024 226 aa7.23□□□□□ -1.25
LSR1LSR1 FOL3Q12676 427 aaPredicted RBP7.23□□□□□ -1.25
LSR1LSR1 RPL9AP05738 191 aaKnown RBP7.22□□□□□ -1.25
LSR1LSR1 SEC24P40482 926 aaKnown RBP7.22□□□□□ -1.25
LSR1LSR1 RPA43P46669 326 aa7.22□□□□□ -1.25
LSR1LSR1 DSK2P48510 373 aa7.22□□□□□ -1.25
LSR1LSR1 RPL21AQ02753 160 aaKnown RBP7.22□□□□□ -1.25
LSR1LSR1 LPP1Q04396 274 aa7.22□□□□□ -1.25
LSR1LSR1 GAT3Q07928 141 aa7.22□□□□□ -1.25
LSR1LSR1 YOL024WQ08172 172 aa7.22□□□□□ -1.25
LSR1LSR1 RPL21BQ12672 160 aaKnown RBP7.22□□□□□ -1.25
LSR1LSR1 YIL002W-AQ3E7Z5 69 aa7.22□□□□□ -1.25
LSR1LSR1 RPL35AP0CX84 120 aaKnown RBP7.21□□□□□ -1.26
LSR1LSR1 RPL35BP0CX85 120 aaKnown RBP7.21□□□□□ -1.26
LSR1LSR1 HMRA1P0CY11 126 aa7.21□□□□□ -1.26
LSR1LSR1 RPB10P22139 70 aa7.21□□□□□ -1.26
LSR1LSR1 YIL163CP40448 117 aa7.21□□□□□ -1.26
LSR1LSR1 CDC40P40968 455 aaPredicted RBP7.21□□□□□ -1.26
LSR1LSR1 MIC27P50945 234 aa7.21□□□□□ -1.26
LSR1LSR1 UBC13P52490 153 aa7.21□□□□□ -1.26
LSR1LSR1 STD1Q02794 444 aa7.21□□□□□ -1.26
LSR1LSR1 YMR166CQ03829 368 aa7.21□□□□□ -1.26
LSR1LSR1 YHP1Q04116 353 aa7.21□□□□□ -1.26
LSR1LSR1 MRL1Q06815 381 aa7.21□□□□□ -1.26
LSR1LSR1 PIN2Q12057 282 aa7.21□□□□□ -1.26
LSR1LSR1 YMR316C-AI2HB70 103 aa7.2□□□□□ -1.26
LSR1LSR1 PMU1P36069 295 aa7.2□□□□□ -1.26
LSR1LSR1 SAS2P40963 338 aa7.2□□□□□ -1.26
LSR1LSR1 YFL015CP43578 164 aa7.2□□□□□ -1.26
LSR1LSR1 RPL9BP51401 191 aaKnown RBP7.2□□□□□ -1.26
LSR1LSR1 DUG3P53871 357 aa7.2□□□□□ -1.26
LSR1LSR1 NAT5Q08689 176 aa7.2□□□□□ -1.26
LSR1LSR1 TOM40P23644 387 aaKnown RBP7.19□□□□□ -1.26
LSR1LSR1 ICS2P38284 255 aa7.19□□□□□ -1.26
LSR1LSR1 YJL118WP47022 219 aa7.19□□□□□ -1.26
LSR1LSR1 CPD1P53314 239 aa7.19□□□□□ -1.26
LSR1LSR1 NDE2Q07500 545 aa7.19□□□□□ -1.26
LSR1LSR1 YOR029WQ12243 111 aa7.19□□□□□ -1.26
LSR1LSR1 GEP5Q12393 293 aa7.19□□□□□ -1.26
LSR1LSR1 PHD1P36093 366 aa7.18□□□□□ -1.26
LSR1LSR1 YBR090CP38253 122 aa7.18□□□□□ -1.26
LSR1LSR1 YAR068WP39564 161 aa7.18□□□□□ -1.26
LSR1LSR1 YFL051CP43552 160 aa7.18□□□□□ -1.26
LSR1LSR1 YGL118CP53132 145 aa7.18□□□□□ -1.26
LSR1LSR1 YDR366CP87287 132 aa7.18□□□□□ -1.26
LSR1LSR1 IZH1Q03419 316 aa7.18□□□□□ -1.26
LSR1LSR1 YTH1Q06102 208 aaPredicted RBP7.18□□□□□ -1.26
LSR1LSR1 YOS1Q3E834 85 aa7.18□□□□□ -1.26
LSR1LSR1 IRA2P19158 3079 aa7.18□□□□□ -1.26
LSR1LSR1 YER190C-BP0CX94 160 aa7.17□□□□□ -1.26
LSR1LSR1 YEL077W-AP0CX95 160 aa7.17□□□□□ -1.26
LSR1LSR1 YGR296C-BP0CX96 160 aa7.17□□□□□ -1.26
LSR1LSR1 YPL283W-BP0CX97 160 aa7.17□□□□□ -1.26
LSR1LSR1 YPR204C-AP0CX98 160 aa7.17□□□□□ -1.26
LSR1LSR1 FPR2P32472 135 aa7.17□□□□□ -1.26
LSR1LSR1 MOH1P38191 138 aa7.17□□□□□ -1.26
LSR1LSR1 YBR184WP38299 523 aa7.17□□□□□ -1.26
LSR1LSR1 PRE5P40302 234 aaKnown RBP7.17□□□□□ -1.26
LSR1LSR1 PIR5P46999 287 aa7.17□□□□□ -1.26
LSR1LSR1 POS5Q06892 414 aa7.17□□□□□ -1.26
LSR1LSR1 TPT1Q12272 230 aaKnown RBP7.17□□□□□ -1.26
LSR1LSR1 YMR105W-AQ8TGS8 64 aa7.17□□□□□ -1.26
LSR1LSR1 SOD1P00445 154 aaKnown RBP7.16□□□□□ -1.26
LSR1LSR1 RPS2P25443 254 aaKnown RBP7.16□□□□□ -1.26
LSR1LSR1 RAD23P32628 398 aaKnown RBP7.16□□□□□ -1.26
LSR1LSR1 ATP19P81451 68 aa7.16□□□□□ -1.26
LSR1LSR1 PKR1Q03880 122 aaKnown RBP7.16□□□□□ -1.26
LSR1LSR1 WTM2Q12206 467 aa7.16□□□□□ -1.26
LSR1LSR1 YCR024C-BQ3E7Z8 88 aa7.16□□□□□ -1.26
LSR1LSR1 RPL39P04650 51 aa7.15□□□□□ -1.26
LSR1LSR1 PIS1P06197 220 aaKnown RBP7.15□□□□□ -1.26
LSR1LSR1 NOP1P15646 327 aaKnown RBP7.15□□□□□ -1.26
LSR1LSR1 HSP12P22943 109 aaKnown RBP7.15□□□□□ -1.26
LSR1LSR1 QRI5P32344 111 aa7.15□□□□□ -1.26
LSR1LSR1 UTR5P32630 166 aa7.15□□□□□ -1.26
LSR1LSR1 ELF1P36053 145 aa7.15□□□□□ -1.26
LSR1LSR1 PAM17P36147 197 aa7.15□□□□□ -1.26
LSR1LSR1 YGR151CP53287 111 aa7.15□□□□□ -1.26
LSR1LSR1 YPL162CQ12042 273 aa7.15□□□□□ -1.26
LSR1LSR1 RPS23AP0CX29 145 aaKnown RBP7.14□□□□□ -1.27
LSR1LSR1 RPS23BP0CX30 145 aa7.14□□□□□ -1.27
LSR1LSR1 NNK1P36003 928 aa7.14□□□□□ -1.27
LSR1LSR1 YHL037CP38733 133 aa7.14□□□□□ -1.27
LSR1LSR1 FYV4P38783 130 aaPredicted RBP7.14□□□□□ -1.27
LSR1LSR1 YHR173CP38864 112 aa7.14□□□□□ -1.27
LSR1LSR1 TEM1P38987 245 aa7.14□□□□□ -1.27
LSR1LSR1 YER134CP40081 178 aa7.14□□□□□ -1.27
LSR1LSR1 THG1P53215 237 aaKnown RBP7.14□□□□□ -1.27
LSR1LSR1 SSU72P53538 206 aaPredicted RBP7.14□□□□□ -1.27
LSR1LSR1 MET32Q12041 191 aa7.14□□□□□ -1.27
LSR1LSR1 YDL157CQ12082 118 aa7.14□□□□□ -1.27
LSR1LSR1 HTB1P02293 131 aaKnown RBP7.13□□□□□ -1.27
LSR1LSR1 HTB2P02294 131 aa7.13□□□□□ -1.27
LSR1LSR1 DFR1P07807 211 aaKnown RBP RIP-Chip data7.13□□□□□ -1.27not detected
LSR1LSR1 TIR1P10863 254 aa7.13□□□□□ -1.27
LSR1LSR1 ATP10P18496 279 aa7.13□□□□□ -1.27
LSR1LSR1 BDH1P39714 382 aa7.13□□□□□ -1.27
LSR1LSR1 SEC72P39742 193 aaKnown RBP7.13□□□□□ -1.27
LSR1LSR1 YFL054CP43549 646 aa7.13□□□□□ -1.27
Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms