RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MIF4GDA9UHW6 222 aaKnown RBP14.62□□□□□ -0.07
PTPRF-202ENST00000372405 PGRMC1O00264 195 aaKnown RBP14.62□□□□□ -0.07
PTPRF-202ENST00000372405 MED7O43513 233 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 MICAL2O94851 1124 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 FGFR1P11362 822 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 VDRP11473 427 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 ATF7P17544 494 aaPredicted RBP14.62□□□□□ -0.07
PTPRF-202ENST00000372405 LRPAP1P30533 357 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 CTNNA1P35221 906 aaKnown RBP14.62□□□□□ -0.07
PTPRF-202ENST00000372405 RPL7AP62424 266 aaKnown RBP14.62□□□□□ -0.07
PTPRF-202ENST00000372405 PAK2Q13177 524 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 MBTPS1Q14703 1052 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 CNGA2Q16280 664 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 CYP4A22Q5TCH4 519 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 DAB2IPQ5VWQ8 1189 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 MRPL10Q7Z7H8 261 aaKnown RBP14.62□□□□□ -0.07
PTPRF-202ENST00000372405 CPXM1Q96SM3 734 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 SELENOOQ9BVL4 669 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 NT5C1AQ9BXI3 368 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 GDAP2Q9NXN4 497 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 TTC7AQ9ULT0 858 aaPredicted RBP14.62□□□□□ -0.07
PTPRF-202ENST00000372405 KPNA7A9QM74 516 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 CALB1P05937 261 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 CKBP12277 381 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 ITGA4P13612 1032 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 GPD2P43304 727 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 SGO2Q562F6 1265 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 PPP1R15BQ5SWA1 713 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 RNPC3Q96LT9 517 aaKnown RBP14.62□□□□□ -0.07
PTPRF-202ENST00000372405 TRAIPQ9BWF2 469 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 AP1M1Q9BXS5 423 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.62□□□□□ -0.076e-6■■■□□ 16.8
PTPRF-202ENST00000372405 WNT8AQ9H1J5 351 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 PARVAQ9NVD7 372 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 DMGDHQ9UI17 866 aaKnown RBP14.62□□□□□ -0.07
PTPRF-202ENST00000372405 PCDHA3Q9Y5H8 950 aa14.62□□□□□ -0.07
PTPRF-202ENST00000372405 TARSL2A2RTX5 802 aaKnown RBP14.61□□□□□ -0.07
PTPRF-202ENST00000372405 MYO1FO00160 1098 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 XPOTO43592 962 aaKnown RBP14.61□□□□□ -0.07
PTPRF-202ENST00000372405 SPOPO43791 374 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 PFKMP08237 780 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 CTNNA2P26232 953 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 LILRA4P59901 499 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 ZNF252P-AS1Q0IIN9 211 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 ARHGEF6Q15052 776 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 WDR93Q6P2C0 686 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 ACOT1Q86TX2 421 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 ERICH1Q86X53 443 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 TTC39CQ8N584 583 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 FEZF2Q8TBJ5 459 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 ZNF560Q96MR9 790 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 LPIN3Q9BQK8 851 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 UNC93B1Q9H1C4 597 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 DPEP3Q9H4B8 488 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 MRPL47Q9HD33 250 aaKnown RBP14.61□□□□□ -0.07
PTPRF-202ENST00000372405 STARD7Q9NQZ5 370 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 PHF24Q9UPV7 400 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 NR2E1Q9Y466 385 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 CEP83Q9Y592 693 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 SCINQ9Y6U3 715 aa14.61□□□□□ -0.07
PTPRF-202ENST00000372405 TDRD15B5MCY1 1934 aaKnown RBP14.61□□□□□ -0.07
PTPRF-202ENST00000372405 CCDC151A5D8V7 595 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 TMEM191CA6NGB0 347 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 ARL5CA6NH57 179 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 M0QYV0 167 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 ZNF623O75123 536 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 ZMYND10O75800 440 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 PROSCO94903 275 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 SEC31AO94979 1220 aaKnown RBP14.6□□□□□ -0.07
PTPRF-202ENST00000372405 FGGP02679 453 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 TAF6P49848 677 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 OGDHQ02218 1023 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 PPP1R26Q5T8A7 1209 aaPredicted RBP14.6□□□□□ -0.07
PTPRF-202ENST00000372405 CC2D1AQ6P1N0 951 aaPredicted RBP14.6□□□□□ -0.07
PTPRF-202ENST00000372405 LCLAT1Q6UWP7 414 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 DPH6Q7L8W6 267 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 UBL4BQ8N7F7 174 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 UBA3Q8TBC4 463 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 ADAM2Q99965 735 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 HINFPQ9BQA5 517 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 TSPAN16Q9UKR8 245 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 L1RE1Q9UN81 338 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 A0A0U1RQF3 1178 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 A0A0U1RQG5 324 aaPredicted RBP14.6□□□□□ -0.07
PTPRF-202ENST00000372405 CCDC66A2RUB6 948 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 ZRANB2O95218 330 aaKnown RBP eCLIP14.6□□□□□ -0.073e-7■■■■■ 46.6
PTPRF-202ENST00000372405 ERBB2P04626 1255 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 PYGMP11217 842 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 LMO2P25791 158 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 PNPLA4P41247 253 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 SCNN1GP51170 649 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 SLC7A5Q01650 507 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 C3orf20Q8ND61 904 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 MCEEQ96PE7 176 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 KRT12Q99456 494 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 ARGLU1Q9NWB6 273 aaPredicted RBP14.6□□□□□ -0.07
PTPRF-202ENST00000372405 KIAA1257Q9ULG3 409 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 GIT1Q9Y2X7 761 aa14.6□□□□□ -0.07
PTPRF-202ENST00000372405 ARVCFO00192 962 aa14.59□□□□□ -0.07
PTPRF-202ENST00000372405 CAND2O75155 1236 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms