RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	YKR005C	Q02203	525 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	YLR281C	Q05863	155 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	NAT3	Q06504	195 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	JID1	Q12350	301 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	YGL041W-A	P0C5N3	154 aa		4.73	□□□□□ -1.65
TFB4	YPR056W	ANB1	P19211	157 aa		4.73	□□□□□ -1.65
TFB4	YPR056W	YFL019C	P43576	117 aa		4.73	□□□□□ -1.65
TFB4	YPR056W	DAD3	P69850	94 aa		4.73	□□□□□ -1.65
TFB4	YPR056W	RPL21A	Q02753	160 aa	Known RBP	4.73	□□□□□ -1.65
TFB4	YPR056W	NHP10	Q03435	203 aa		4.73	□□□□□ -1.65
TFB4	YPR056W	YMR244W	Q04018	355 aa		4.73	□□□□□ -1.65
TFB4	YPR056W	IZH2	Q12442	317 aa		4.73	□□□□□ -1.65
TFB4	YPR056W	OCA6	Q12454	224 aa		4.73	□□□□□ -1.65
TFB4	YPR056W	HUT1	Q12520	339 aa		4.73	□□□□□ -1.65
TFB4	YPR056W	YLR156W	P0CE96	114 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	YLR159W	P0CE97	114 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	YLR161W	P0CE98	114 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	URA5	P13298	226 aa	Known RBP	4.72	□□□□□ -1.65
TFB4	YPR056W	AHT1	P29589	182 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
TFB4	YPR056W	YAR068W	P39564	161 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	OSH6	Q02201	448 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	YDR115W	Q04598	105 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	RNH202	Q05635	350 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
TFB4	YPR056W	MCP1	Q12106	302 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	PST1	Q12355	444 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	ATG5	Q12380	294 aa		4.72	□□□□□ -1.65
TFB4	YPR056W	ADH3	P07246	375 aa	Known RBP	4.71	□□□□□ -1.66
TFB4	YPR056W	VMA11	P32842	164 aa		4.71	□□□□□ -1.66
TFB4	YPR056W	TEM1	P38987	245 aa		4.71	□□□□□ -1.66
TFB4	YPR056W	API2	Q04413	109 aa		4.7	□□□□□ -1.66
TFB4	YPR056W	YLR042C	Q07990	161 aa		4.7	□□□□□ -1.66
TFB4	YPR056W	RPB11	P38902	120 aa		4.69	□□□□□ -1.66
TFB4	YPR056W	FIS1	P40515	155 aa		4.69	□□□□□ -1.66
TFB4	YPR056W	SYS1	P41544	203 aa		4.69	□□□□□ -1.66
TFB4	YPR056W	SBH1	P52870	82 aa		4.69	□□□□□ -1.66
TFB4	YPR056W	SPG3	Q04398	127 aa	Predicted RBP	4.69	□□□□□ -1.66
TFB4	YPR056W	YBR090C	P38253	122 aa		4.68	□□□□□ -1.66
TFB4	YPR056W	HTD2	P38790	280 aa	Known RBP	4.68	□□□□□ -1.66
TFB4	YPR056W	YEA6	P39953	335 aa		4.68	□□□□□ -1.66
TFB4	YPR056W	YNL200C	P40165	246 aa	Known RBP	4.68	□□□□□ -1.66
TFB4	YPR056W	DIE2	P50076	525 aa		4.68	□□□□□ -1.66
TFB4	YPR056W	YGL118C	P53132	145 aa		4.68	□□□□□ -1.66
TFB4	YPR056W	EST3	Q03096	181 aa		4.68	□□□□□ -1.66
TFB4	YPR056W	SMT3	Q12306	101 aa	Known RBP	4.68	□□□□□ -1.66
TFB4	YPR056W	YPL247C	Q12523	523 aa		4.68	□□□□□ -1.66
TFB4	YPR056W	ATP15	P21306	62 aa		4.67	□□□□□ -1.66
TFB4	YPR056W	SDH3	P33421	198 aa		4.67	□□□□□ -1.66
TFB4	YPR056W	YER134C	P40081	178 aa		4.67	□□□□□ -1.66
TFB4	YPR056W	EMC4	P53073	190 aa		4.67	□□□□□ -1.66
TFB4	YPR056W	ELC1	Q03071	99 aa		4.67	□□□□□ -1.66
TFB4	YPR056W	SAS5	Q99314	248 aa		4.67	□□□□□ -1.66
TFB4	YPR056W	PAN1	P32521	1480 aa		4.67	□□□□□ -1.66
TFB4	YPR056W	HSP12	P22943	109 aa	Known RBP	4.66	□□□□□ -1.66
TFB4	YPR056W	FYV4	P38783	130 aa	Predicted RBP	4.66	□□□□□ -1.66
TFB4	YPR056W	VTC1	P40046	129 aa	RIP-Chip data	4.66	□□□□□ -1.66	not detected
TFB4	YPR056W	KRE5	P22023	1365 aa		4.65	□□□□□ -1.66
TFB4	YPR056W	TRM3	Q07527	1436 aa		4.65	□□□□□ -1.66
TFB4	YPR056W	YEL009C-A	A0A023PZF2	135 aa		4.65	□□□□□ -1.67
TFB4	YPR056W	REP2	P03872	296 aa		4.65	□□□□□ -1.67
TFB4	YPR056W	MRS4	P23500	304 aa		4.65	□□□□□ -1.67
TFB4	YPR056W	RNP1	P32385	249 aa		4.65	□□□□□ -1.67
TFB4	YPR056W	PHS1	P40857	217 aa		4.65	□□□□□ -1.67
TFB4	YPR056W	LSM8	P47093	109 aa	Known RBP	4.65	□□□□□ -1.67
TFB4	YPR056W	GEP7	P53171	287 aa		4.65	□□□□□ -1.67
TFB4	YPR056W	TVP15	Q03860	143 aa		4.65	□□□□□ -1.67
TFB4	YPR056W	TVP18	Q04767	167 aa		4.65	□□□□□ -1.67
TFB4	YPR056W	ATO3	Q12359	275 aa		4.65	□□□□□ -1.67
TFB4	YPR056W	UBC5	P15732	148 aa		4.64	□□□□□ -1.67
TFB4	YPR056W	RCN1	P36054	211 aa		4.64	□□□□□ -1.67
TFB4	YPR056W	SDH4	P37298	181 aa		4.64	□□□□□ -1.67
TFB4	YPR056W	SFT2	P38166	215 aa		4.64	□□□□□ -1.67
TFB4	YPR056W	ASP1	P38986	381 aa	Predicted RBP	4.64	□□□□□ -1.67
TFB4	YPR056W	YIL054W	P40524	105 aa		4.64	□□□□□ -1.67
TFB4	YPR056W	GAT4	P40569	121 aa		4.64	□□□□□ -1.67
TFB4	YPR056W	GON7	P46984	123 aa		4.64	□□□□□ -1.67
TFB4	YPR056W	IRC25	Q07951	179 aa		4.64	□□□□□ -1.67
TFB4	YPR056W	DFM1	Q12743	341 aa	Known RBP	4.64	□□□□□ -1.67
TFB4	YPR056W	YAR023C	D6VPM8	179 aa		4.63	□□□□□ -1.67
TFB4	YPR056W	CPA1	P07258	411 aa	Known RBP	4.63	□□□□□ -1.67
TFB4	YPR056W	PRE1	P22141	198 aa	Known RBP	4.63	□□□□□ -1.67
TFB4	YPR056W	RFS1	P38234	210 aa	Known RBP	4.63	□□□□□ -1.67
TFB4	YPR056W	PTH1	P38876	190 aa	Known RBP	4.63	□□□□□ -1.67
TFB4	YPR056W	GAL83	Q04739	417 aa		4.63	□□□□□ -1.67
TFB4	YPR056W	YOL029C	Q08187	201 aa		4.63	□□□□□ -1.67
TFB4	YPR056W	FYV12	Q08559	129 aa		4.63	□□□□□ -1.67
TFB4	YPR056W	GPI18	P38211	433 aa		4.62	□□□□□ -1.67
TFB4	YPR056W	YND1	P40009	630 aa		4.62	□□□□□ -1.67
TFB4	YPR056W	GNA1	P43577	159 aa	Predicted RBP	4.62	□□□□□ -1.67
TFB4	YPR056W	YGL260W	P53056	76 aa		4.62	□□□□□ -1.67
TFB4	YPR056W	UPS1	Q05776	175 aa		4.62	□□□□□ -1.67
TFB4	YPR056W	ISD11	Q6Q560	94 aa		4.62	□□□□□ -1.67
TFB4	YPR056W	PDR11	P40550	1411 aa		4.62	□□□□□ -1.67
TFB4	YPR056W	HYP2	P23301	157 aa	Known RBP	4.61	□□□□□ -1.67
TFB4	YPR056W	PEX4	P29340	183 aa		4.61	□□□□□ -1.67
TFB4	YPR056W	YER188W	P40103	239 aa		4.61	□□□□□ -1.67
TFB4	YPR056W	MPM1	P40364	252 aa		4.61	□□□□□ -1.67
TFB4	YPR056W	ARC15	P40518	154 aa	RIP-Chip data	4.61	□□□□□ -1.67	not detected
TFB4	YPR056W	YNR062C	P53748	327 aa		4.61	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 119.2 ms