RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C YLR031WQ07978 186 aa-0.11□□□□□ -2.43
NIP1YMR309C VAM10Q08474 114 aa-0.11□□□□□ -2.43
NIP1YMR309C INO80P53115 1489 aa-0.11□□□□□ -2.43
NIP1YMR309C YDR157WA0A023PZE8 133 aa-0.12□□□□□ -2.43
NIP1YMR309C GCY1P14065 312 aaKnown RBP RIP-Chip data-0.12□□□□□ -2.43not detected
NIP1YMR309C CNB1P25296 175 aa-0.12□□□□□ -2.43
NIP1YMR309C RTC3P38804 111 aaPredicted RBP-0.12□□□□□ -2.43
NIP1YMR309C HHY1P39982 102 aa-0.12□□□□□ -2.43
NIP1YMR309C NSA2P40078 261 aaKnown RBP-0.12□□□□□ -2.43
NIP1YMR309C GPI14P47088 403 aaKnown RBP-0.12□□□□□ -2.43
NIP1YMR309C YKR005CQ02203 525 aa-0.12□□□□□ -2.43
NIP1YMR309C PST2Q12335 198 aaKnown RBP-0.12□□□□□ -2.43
NIP1YMR309C PDS1P40316 373 aaPredicted RBP-0.12□□□□□ -2.43
NIP1YMR309C MPM1P40364 252 aa-0.12□□□□□ -2.43
NIP1YMR309C MOB1P40484 314 aa-0.12□□□□□ -2.43
NIP1YMR309C NSE4P43124 402 aa-0.12□□□□□ -2.43
NIP1YMR309C CWC23P52868 283 aaPredicted RBP-0.12□□□□□ -2.43
NIP1YMR309C MGR2Q02889 113 aa-0.12□□□□□ -2.43
NIP1YMR309C ATG41Q12048 136 aa-0.12□□□□□ -2.43
NIP1YMR309C YOR342CQ12182 319 aa-0.12□□□□□ -2.43
NIP1YMR309C YLR307C-AQ3E825 87 aa-0.12□□□□□ -2.43
NIP1YMR309C CDC33P07260 213 aaKnown RBP-0.13□□□□□ -2.43
NIP1YMR309C RPL43AP0CX25 92 aaKnown RBP-0.13□□□□□ -2.43
NIP1YMR309C RPL43BP0CX26 92 aa-0.13□□□□□ -2.43
NIP1YMR309C PTC1P35182 281 aa-0.13□□□□□ -2.43
NIP1YMR309C SHB17P36136 271 aaKnown RBP-0.13□□□□□ -2.43
NIP1YMR309C IKI1P38874 309 aa-0.13□□□□□ -2.43
NIP1YMR309C YHP1Q04116 353 aa-0.13□□□□□ -2.43
NIP1YMR309C NAT3Q06504 195 aa-0.13□□□□□ -2.43
NIP1YMR309C HRD1Q08109 551 aa-0.13□□□□□ -2.43
NIP1YMR309C YDL157CQ12082 118 aa-0.13□□□□□ -2.43
NIP1YMR309C YPR014CQ6B0W2 109 aa-0.13□□□□□ -2.43
NIP1YMR309C IGO2Q9P305 131 aa-0.13□□□□□ -2.43
NIP1YMR309C ROM2P51862 1356 aaKnown RBP-0.13□□□□□ -2.43
NIP1YMR309C HFA1P32874 2273 aa-0.13□□□□□ -2.43
NIP1YMR309C KIN28P06242 306 aa-0.13□□□□□ -2.43
NIP1YMR309C HAP2P06774 265 aa-0.13□□□□□ -2.43
NIP1YMR309C CCS1P40202 249 aaKnown RBP-0.13□□□□□ -2.43
NIP1YMR309C YMR141CP40211 102 aa-0.13□□□□□ -2.43
NIP1YMR309C OTU1P43558 301 aa-0.13□□□□□ -2.43
NIP1YMR309C YFL019CP43576 117 aa-0.13□□□□□ -2.43
NIP1YMR309C TDA4P47153 279 aa-0.13□□□□□ -2.43
NIP1YMR309C YGL230CP53074 147 aa-0.13□□□□□ -2.43
NIP1YMR309C VPS28Q02767 242 aa-0.13□□□□□ -2.43
NIP1YMR309C DML1Q03652 475 aa-0.13□□□□□ -2.43
NIP1YMR309C AVO2Q04749 426 aa-0.13□□□□□ -2.43
NIP1YMR309C DAS2Q12084 232 aa-0.13□□□□□ -2.43
NIP1YMR309C NCB2Q92317 146 aa-0.13□□□□□ -2.43
NIP1YMR309C TAF2P23255 1407 aa-0.14□□□□□ -2.43
NIP1YMR309C HTB1P02293 131 aaKnown RBP-0.14□□□□□ -2.43
NIP1YMR309C HTB2P02294 131 aa-0.14□□□□□ -2.43
NIP1YMR309C MRS1P07266 363 aa-0.14□□□□□ -2.43
NIP1YMR309C RPS22AP0C0W1 130 aaKnown RBP-0.14□□□□□ -2.43
NIP1YMR309C MAK31P23059 88 aa-0.14□□□□□ -2.43
NIP1YMR309C RRT1P38192 103 aa-0.14□□□□□ -2.43
NIP1YMR309C NSG1P38837 291 aa-0.14□□□□□ -2.43
NIP1YMR309C RFC2P40348 353 aa-0.14□□□□□ -2.43
NIP1YMR309C MMS2P53152 137 aa-0.14□□□□□ -2.43
NIP1YMR309C RPS22BQ3E7Y3 130 aaKnown RBP-0.14□□□□□ -2.43
NIP1YMR309C YLR157W-EP0CF00 54 aa-0.14□□□□□ -2.43
NIP1YMR309C ASF2P32448 525 aaPredicted RBP-0.14□□□□□ -2.43
NIP1YMR309C TAF14P35189 244 aa-0.14□□□□□ -2.43
NIP1YMR309C RPS29BP41058 56 aaKnown RBP-0.14□□□□□ -2.43
NIP1YMR309C APS3P47064 194 aa-0.14□□□□□ -2.43
NIP1YMR309C GEP7P53171 287 aa-0.14□□□□□ -2.43
NIP1YMR309C NRK1P53915 240 aa-0.14□□□□□ -2.43
NIP1YMR309C GAL83Q04739 417 aa-0.14□□□□□ -2.43
NIP1YMR309C YMR315WQ04869 349 aaKnown RBP-0.14□□□□□ -2.43
NIP1YMR309C ATP20Q12233 115 aa-0.14□□□□□ -2.43
NIP1YMR309C YLR412C-AQ3E742 68 aa-0.14□□□□□ -2.43
NIP1YMR309C CBF1P17106 351 aa-0.15□□□□□ -2.43
NIP1YMR309C TRX3P25372 127 aa-0.15□□□□□ -2.43
NIP1YMR309C HSP30P25619 332 aa-0.15□□□□□ -2.43
NIP1YMR309C RFA3P26755 122 aaKnown RBP-0.15□□□□□ -2.43
NIP1YMR309C HTD2P38790 280 aaKnown RBP-0.15□□□□□ -2.43
NIP1YMR309C RTC4P53850 401 aa-0.15□□□□□ -2.43
NIP1YMR309C YNL184CP53876 108 aa-0.15□□□□□ -2.43
NIP1YMR309C YML079WQ03629 201 aa-0.15□□□□□ -2.43
NIP1YMR309C HSL1P34244 1518 aa-0.15□□□□□ -2.43
NIP1YMR309C YRA2P36036 203 aaKnown RBP RIP-Chip data-0.15□□□□□ -2.43not detected
NIP1YMR309C RIM9Q04734 239 aa-0.15□□□□□ -2.43
NIP1YMR309C RUD3Q12234 484 aaKnown RBP-0.15□□□□□ -2.43
NIP1YMR309C RAD6P06104 172 aa-0.16□□□□□ -2.43
NIP1YMR309C RPS25BP0C0T4 108 aaKnown RBP-0.16□□□□□ -2.43
NIP1YMR309C SEC14P24280 304 aaKnown RBP-0.16□□□□□ -2.43
NIP1YMR309C YBR027CP38220 110 aa-0.16□□□□□ -2.43
NIP1YMR309C YGR269WP40326 108 aa-0.16□□□□□ -2.43
NIP1YMR309C YJL009WP47078 108 aa-0.16□□□□□ -2.43
NIP1YMR309C TIM13P53299 105 aa-0.16□□□□□ -2.43
NIP1YMR309C MRPS17Q03246 237 aaPredicted RBP-0.16□□□□□ -2.43
NIP1YMR309C AIM34Q03673 198 aa-0.16□□□□□ -2.43
NIP1YMR309C YOL024WQ08172 172 aa-0.16□□□□□ -2.43
NIP1YMR309C GIS3Q12418 502 aa-0.16□□□□□ -2.43
NIP1YMR309C RPS25AQ3E792 108 aaPredicted RBP-0.16□□□□□ -2.43
NIP1YMR309C TRM3Q07527 1436 aa-0.16□□□□□ -2.44
NIP1YMR309C MATALPHA2P0CY08 210 aa-0.16□□□□□ -2.44
NIP1YMR309C HMLALPHA2P0CY09 210 aa-0.16□□□□□ -2.44
NIP1YMR309C TAH1P25638 111 aaPredicted RBP-0.16□□□□□ -2.44
NIP1YMR309C ADE1P27616 306 aa-0.16□□□□□ -2.44
NIP1YMR309C UBC6P33296 250 aaPredicted RBP-0.16□□□□□ -2.44
Retrieved 100 of 5,963 RNA–protein pairs in 112.6 ms