RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W YER189WP40104 122 aa2.45□□□□□ -2.02
UBP8YMR223W STB1P42845 420 aa2.45□□□□□ -2.02
UBP8YMR223W YJL028WP47062 111 aa2.45□□□□□ -2.02
UBP8YMR223W YAE1P47118 141 aaPredicted RBP2.45□□□□□ -2.02
UBP8YMR223W XPT1P47165 209 aa2.45□□□□□ -2.02
UBP8YMR223W AIF1P52923 378 aa2.45□□□□□ -2.02
UBP8YMR223W AIM11P87275 137 aa2.45□□□□□ -2.02
UBP8YMR223W YMR099CQ03161 297 aaKnown RBP2.45□□□□□ -2.02
UBP8YMR223W YMR244WQ04018 355 aa2.45□□□□□ -2.02
UBP8YMR223W HTL1Q9URQ5 78 aa2.45□□□□□ -2.02
UBP8YMR223W ATP5P09457 212 aa2.44□□□□□ -2.02
UBP8YMR223W SHB17P36136 271 aaKnown RBP2.44□□□□□ -2.02
UBP8YMR223W YPT31P38555 223 aaKnown RBP2.44□□□□□ -2.02
UBP8YMR223W RPF1P38805 295 aaKnown RBP2.44□□□□□ -2.02
UBP8YMR223W AVT2P39981 480 aa2.44□□□□□ -2.02
UBP8YMR223W MIC19P43594 170 aa2.44□□□□□ -2.02
UBP8YMR223W SKI6P46948 246 aaPredicted RBP2.44□□□□□ -2.02
UBP8YMR223W GPI2P46961 280 aa2.44□□□□□ -2.02
UBP8YMR223W TDA4P47153 279 aa2.44□□□□□ -2.02
UBP8YMR223W YGL193CP53097 103 aa2.44□□□□□ -2.02
UBP8YMR223W DAD3P69850 94 aa2.44□□□□□ -2.02
UBP8YMR223W BUD25P85052 153 aa2.44□□□□□ -2.02
UBP8YMR223W VPS28Q02767 242 aa2.44□□□□□ -2.02
UBP8YMR223W NHP10Q03435 203 aa2.44□□□□□ -2.02
UBP8YMR223W YLR042CQ07990 161 aa2.44□□□□□ -2.02
UBP8YMR223W FYV12Q08559 129 aa2.44□□□□□ -2.02
UBP8YMR223W ATG5Q12380 294 aa2.44□□□□□ -2.02
UBP8YMR223W SPP41P38904 1435 aa2.44□□□□□ -2.02
UBP8YMR223W RPB3P16370 318 aaKnown RBP2.43□□□□□ -2.02
UBP8YMR223W SEC59P20048 519 aa2.43□□□□□ -2.02
UBP8YMR223W RPL14AP36105 138 aaKnown RBP2.43□□□□□ -2.02
UBP8YMR223W RPL14BP38754 138 aaKnown RBP2.43□□□□□ -2.02
UBP8YMR223W RIO2P40160 425 aaKnown RBP2.43□□□□□ -2.02
UBP8YMR223W YNL200CP40165 246 aaKnown RBP2.43□□□□□ -2.02
UBP8YMR223W YFL019CP43576 117 aa2.43□□□□□ -2.02
UBP8YMR223W YNL033WP53964 284 aa2.43□□□□□ -2.02
UBP8YMR223W YNL019CP53975 284 aa2.43□□□□□ -2.02
UBP8YMR223W RNH202Q05635 350 aa2.43□□□□□ -2.02
UBP8YMR223W NAT3Q06504 195 aa2.43□□□□□ -2.02
UBP8YMR223W YPL264CQ08980 353 aa2.43□□□□□ -2.02
UBP8YMR223W MCP1Q12106 302 aa2.43□□□□□ -2.02
UBP8YMR223W OCA6Q12454 224 aa2.43□□□□□ -2.02
UBP8YMR223W HUT1Q12520 339 aa2.43□□□□□ -2.02
UBP8YMR223W RPL21BQ12672 160 aaKnown RBP2.43□□□□□ -2.02
UBP8YMR223W YML100W-AQ8TGT0 57 aa2.43□□□□□ -2.02
UBP8YMR223W YLR462WO13556 202 aa2.42□□□□□ -2.02
UBP8YMR223W SPS2P08459 502 aa2.42□□□□□ -2.02
UBP8YMR223W YLR156WP0CE96 114 aa2.42□□□□□ -2.02
UBP8YMR223W YLR159WP0CE97 114 aa2.42□□□□□ -2.02
UBP8YMR223W YLR161WP0CE98 114 aa2.42□□□□□ -2.02
UBP8YMR223W ATP15P21306 62 aa2.42□□□□□ -2.02
UBP8YMR223W MRPL15P36523 253 aa2.42□□□□□ -2.02
UBP8YMR223W MRPL27P36526 146 aaPredicted RBP2.42□□□□□ -2.02
UBP8YMR223W AVT6P40074 448 aa2.42□□□□□ -2.02
UBP8YMR223W IGD1P43598 195 aa2.42□□□□□ -2.02
UBP8YMR223W DIE2P50076 525 aa2.42□□□□□ -2.02
UBP8YMR223W YGL230CP53074 147 aa2.42□□□□□ -2.02
UBP8YMR223W SCP1Q08873 200 aa2.42□□□□□ -2.02
UBP8YMR223W REV3P14284 1504 aa2.42□□□□□ -2.02
UBP8YMR223W SPT6P23615 1451 aaKnown RBP2.42□□□□□ -2.02
UBP8YMR223W DUR1,2P32528 1835 aaKnown RBP2.42□□□□□ -2.02
UBP8YMR223W FYV4P38783 130 aaPredicted RBP2.42□□□□□ -2.02
UBP8YMR223W NSG1P38837 291 aa2.42□□□□□ -2.02
UBP8YMR223W AIM2P39721 246 aa2.42□□□□□ -2.02
UBP8YMR223W YEL075CP39972 122 aa2.42□□□□□ -2.02
UBP8YMR223W TIF34P40217 347 aaKnown RBP2.42□□□□□ -2.02
UBP8YMR223W RPL21AQ02753 160 aaKnown RBP2.42□□□□□ -2.02
UBP8YMR223W YOR020W-AQ3E824 90 aa2.42□□□□□ -2.02
UBP8YMR223W CCA1P21269 546 aa2.41□□□□□ -2.02
UBP8YMR223W VTC1P40046 129 aaRIP-Chip data2.41□□□□□ -2.02not detected
UBP8YMR223W GAT4P40569 121 aa2.41□□□□□ -2.02
UBP8YMR223W SYS1P41544 203 aa2.41□□□□□ -2.02
UBP8YMR223W RPE1P46969 238 aa2.41□□□□□ -2.02
UBP8YMR223W GEP7P53171 287 aa2.41□□□□□ -2.02
UBP8YMR223W OSH6Q02201 448 aa2.41□□□□□ -2.02
UBP8YMR223W YDR115WQ04598 105 aa2.41□□□□□ -2.02
UBP8YMR223W TVP18Q04767 167 aa2.41□□□□□ -2.02
UBP8YMR223W YGL041W-AP0C5N3 154 aa2.4□□□□□ -2.03
UBP8YMR223W BET1P22804 142 aa2.4□□□□□ -2.03
UBP8YMR223W MRS4P23500 304 aa2.4□□□□□ -2.03
UBP8YMR223W TOM40P23644 387 aaKnown RBP2.4□□□□□ -2.03
UBP8YMR223W AHT1P29589 182 aa2.4□□□□□ -2.03
UBP8YMR223W RCN1P36054 211 aa2.4□□□□□ -2.03
UBP8YMR223W HTD2P38790 280 aaKnown RBP2.4□□□□□ -2.03
UBP8YMR223W YER188WP40103 239 aa2.4□□□□□ -2.03
UBP8YMR223W EST3Q03096 181 aa2.4□□□□□ -2.03
UBP8YMR223W FCF2Q12035 217 aaPredicted RBP2.4□□□□□ -2.03
UBP8YMR223W YPL247CQ12523 523 aa2.4□□□□□ -2.03
UBP8YMR223W YLR412C-AQ3E742 68 aa2.4□□□□□ -2.03
UBP8YMR223W REP2P03872 296 aa2.39□□□□□ -2.03
UBP8YMR223W UBC5P15732 148 aa2.39□□□□□ -2.03
UBP8YMR223W RPB9P27999 122 aa2.39□□□□□ -2.03
UBP8YMR223W YBR090CP38253 122 aa2.39□□□□□ -2.03
UBP8YMR223W RPB11P38902 120 aa2.39□□□□□ -2.03
UBP8YMR223W YEA6P39953 335 aa2.39□□□□□ -2.03
UBP8YMR223W BAT2P47176 376 aaKnown RBP2.39□□□□□ -2.03
UBP8YMR223W GAL83Q04739 417 aa2.39□□□□□ -2.03
UBP8YMR223W ECM19Q06011 112 aa2.39□□□□□ -2.03
UBP8YMR223W SLD7Q08457 257 aa2.39□□□□□ -2.03
UBP8YMR223W YGL194C-AQ2V2P6 80 aa2.39□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 32.8 ms