RNA–Protein interactions for RNA: YKR029C

SET3, Transcript of Defining member of the SET3 histone deacetylase complex, yeast

Gene SET3, Length 2,256 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SET3	YKR029C	FUS2	Q05670	677 aa		0.72	□□□□□ -2.29
SET3	YKR029C	GPM2	Q12008	311 aa		0.72	□□□□□ -2.29
SET3	YKR029C	MCP1	Q12106	302 aa		0.72	□□□□□ -2.29
SET3	YKR029C	YHR214C-E	Q8TGK0	99 aa		0.72	□□□□□ -2.29
SET3	YKR029C	RAS2	P01120	322 aa	Known RBP	0.71	□□□□□ -2.3
SET3	YKR029C	SIR2	P06700	562 aa		0.71	□□□□□ -2.3
SET3	YKR029C	RPB3	P16370	318 aa	Known RBP	0.71	□□□□□ -2.3
SET3	YKR029C	YBR209W	P38311	105 aa		0.71	□□□□□ -2.3
SET3	YKR029C	YBR285W	P38354	144 aa		0.71	□□□□□ -2.3
SET3	YKR029C	LSM4	P40070	187 aa	Known RBP	0.71	□□□□□ -2.3
SET3	YKR029C	DOC1	P53068	250 aa		0.71	□□□□□ -2.3
SET3	YKR029C	MMS2	P53152	137 aa		0.71	□□□□□ -2.3
SET3	YKR029C	GIM3	P53900	129 aa		0.71	□□□□□ -2.3
SET3	YKR029C	YDR249C	Q03787	373 aa		0.71	□□□□□ -2.3
SET3	YKR029C	SPG3	Q04398	127 aa	Predicted RBP	0.71	□□□□□ -2.3
SET3	YKR029C	SML1	Q04964	104 aa		0.71	□□□□□ -2.3
SET3	YKR029C	GGA1	Q06336	557 aa		0.71	□□□□□ -2.3
SET3	YKR029C	BEM2	P39960	2167 aa	Known RBP	0.71	□□□□□ -2.3
SET3	YKR029C	MLP1	Q02455	1875 aa	Known RBP	0.71	□□□□□ -2.3
SET3	YKR029C	JIP3	O13555	125 aa		0.71	□□□□□ -2.3
SET3	YKR029C	YCR090C	P25654	182 aa	Known RBP	0.71	□□□□□ -2.3
SET3	YKR029C	TFC1	P32367	649 aa		0.71	□□□□□ -2.3
SET3	YKR029C	ECM4	P36156	370 aa		0.71	□□□□□ -2.3
SET3	YKR029C	GLE2	P40066	365 aa		0.71	□□□□□ -2.3
SET3	YKR029C	AIM25	P47140	327 aa		0.71	□□□□□ -2.3
SET3	YKR029C	BOL2	P53082	120 aa		0.71	□□□□□ -2.3
SET3	YKR029C	HNT1	Q04344	158 aa	Known RBP	0.71	□□□□□ -2.3
SET3	YKR029C	FSF1	Q12029	327 aa	Known RBP	0.71	□□□□□ -2.3
SET3	YKR029C	ATG40	Q99325	256 aa		0.71	□□□□□ -2.3
SET3	YKR029C	SAC3	P46674	1301 aa		0.7	□□□□□ -2.3
SET3	YKR029C	QCR7	P00128	127 aa		0.7	□□□□□ -2.3
SET3	YKR029C	YPK2	P18961	677 aa		0.7	□□□□□ -2.3
SET3	YKR029C	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.7	□□□□□ -2.3	not detected
SET3	YKR029C	SRX1	P36077	127 aa		0.7	□□□□□ -2.3
SET3	YKR029C	CAF4	P36130	643 aa		0.7	□□□□□ -2.3
SET3	YKR029C	NOP19	P53317	196 aa	Predicted RBP	0.7	□□□□□ -2.3
SET3	YKR029C	RTC4	P53850	401 aa		0.7	□□□□□ -2.3
SET3	YKR029C	PET191	Q02772	108 aa		0.7	□□□□□ -2.3
SET3	YKR029C	YOL160W	Q08321	113 aa		0.7	□□□□□ -2.3
SET3	YKR029C	YFR032C-B	Q8TGU2	87 aa		0.7	□□□□□ -2.3
SET3	YKR029C	MYO1	P08964	1928 aa		0.7	□□□□□ -2.3
SET3	YKR029C	FLO9	P39712	1322 aa		0.7	□□□□□ -2.3
SET3	YKR029C	MBF1	O14467	151 aa	Known RBP	0.69	□□□□□ -2.3
SET3	YKR029C	YOL162W	P0CF19	215 aa		0.69	□□□□□ -2.3
SET3	YKR029C	TMA19	P35691	167 aa	Known RBP	0.69	□□□□□ -2.3
SET3	YKR029C	ERJ5	P43613	295 aa	Predicted RBP	0.69	□□□□□ -2.3
SET3	YKR029C	HOP2	P53187	214 aa		0.69	□□□□□ -2.3
SET3	YKR029C	YDR274C	P87283	123 aa		0.69	□□□□□ -2.3
SET3	YKR029C	ANT1	Q06497	328 aa		0.69	□□□□□ -2.3
SET3	YKR029C	YLR036C	Q07986	203 aa		0.69	□□□□□ -2.3
SET3	YKR029C	YNG1	Q08465	219 aa		0.69	□□□□□ -2.3
SET3	YKR029C	YIL046W-A	Q3E7Z4	54 aa		0.69	□□□□□ -2.3
SET3	YKR029C	SEC16	P48415	2195 aa	Known RBP	0.69	□□□□□ -2.3
SET3	YKR029C	CPA1	P07258	411 aa	Known RBP	0.69	□□□□□ -2.3
SET3	YKR029C	YBR219C	P38317	127 aa		0.69	□□□□□ -2.3
SET3	YKR029C	GAA1	P39012	614 aa		0.69	□□□□□ -2.3
SET3	YKR029C	YER135C	P40082	130 aa		0.69	□□□□□ -2.3
SET3	YKR029C	PDS1	P40316	373 aa	Predicted RBP	0.69	□□□□□ -2.3
SET3	YKR029C	TMA22	P47089	198 aa	Predicted RBP	0.69	□□□□□ -2.3
SET3	YKR029C	CUE4	Q04201	117 aa	Predicted RBP	0.69	□□□□□ -2.3
SET3	YKR029C	DYN3	Q04949	312 aa		0.69	□□□□□ -2.3
SET3	YKR029C	YLR031W	Q07978	186 aa		0.69	□□□□□ -2.3
SET3	YKR029C	RIO1	Q12196	484 aa	Known RBP	0.69	□□□□□ -2.3
SET3	YKR029C	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.69	□□□□□ -2.3
SET3	YKR029C	IGO2	Q9P305	131 aa		0.69	□□□□□ -2.3
SET3	YKR029C	DUR1,2	P32528	1835 aa	Known RBP	0.69	□□□□□ -2.3
SET3	YKR029C	PDR18	P53756	1333 aa		0.68	□□□□□ -2.3
SET3	YKR029C	MRS1	P07266	363 aa		0.68	□□□□□ -2.3
SET3	YKR029C	SNF4	P12904	322 aa		0.68	□□□□□ -2.3
SET3	YKR029C	ATP15	P21306	62 aa		0.68	□□□□□ -2.3
SET3	YKR029C	CNB1	P25296	175 aa		0.68	□□□□□ -2.3
SET3	YKR029C	ASF2	P32448	525 aa	Predicted RBP	0.68	□□□□□ -2.3
SET3	YKR029C	PAN3	P36102	679 aa	Predicted RBP	0.68	□□□□□ -2.3
SET3	YKR029C	YKR045C	P36138	183 aa		0.68	□□□□□ -2.3
SET3	YKR029C	SHG1	P38337	142 aa		0.68	□□□□□ -2.3
SET3	YKR029C	RPL13B	P40212	199 aa	Known RBP	0.68	□□□□□ -2.3
SET3	YKR029C	YNR077C	P53758	84 aa		0.68	□□□□□ -2.3
SET3	YKR029C	NUP49	Q02199	472 aa		0.68	□□□□□ -2.3
SET3	YKR029C	GRX3	Q03835	250 aa		0.68	□□□□□ -2.3
SET3	YKR029C	YET3	Q07451	203 aa		0.68	□□□□□ -2.3
SET3	YKR029C	YDL180W	Q12301	547 aa		0.68	□□□□□ -2.3
SET3	YKR029C	RPL13A	Q12690	199 aa	Predicted RBP	0.68	□□□□□ -2.3
SET3	YKR029C	YCL012C	Q8J0M4	134 aa		0.68	□□□□□ -2.3
SET3	YKR029C	ODC2	Q99297	307 aa		0.68	□□□□□ -2.3
SET3	YKR029C	MOT1	P32333	1867 aa		0.68	□□□□□ -2.3
SET3	YKR029C	YLR236C	A0A023PZG4	107 aa		0.68	□□□□□ -2.3
SET3	YKR029C	GPA2	P10823	449 aa		0.68	□□□□□ -2.3
SET3	YKR029C	YGL010W	P25338	174 aa		0.68	□□□□□ -2.3
SET3	YKR029C	KDX1	P36005	433 aa		0.68	□□□□□ -2.3
SET3	YKR029C	TVP38	P36164	337 aa		0.68	□□□□□ -2.3
SET3	YKR029C	YEA4	P40004	342 aa		0.68	□□□□□ -2.3
SET3	YKR029C	YER134C	P40081	178 aa		0.68	□□□□□ -2.3
SET3	YKR029C	ERG10	P41338	398 aa	Known RBP	0.68	□□□□□ -2.3
SET3	YKR029C	YPR014C	Q6B0W2	109 aa		0.68	□□□□□ -2.3
SET3	YKR029C	TAH1	P25638	111 aa	Predicted RBP	0.67	□□□□□ -2.3
SET3	YKR029C	OCH1	P31755	480 aa		0.67	□□□□□ -2.3
SET3	YKR029C	OPY1	P38271	328 aa		0.67	□□□□□ -2.3
SET3	YKR029C	SER2	P42941	309 aa		0.67	□□□□□ -2.3
SET3	YKR029C	SKI6	P46948	246 aa	Predicted RBP	0.67	□□□□□ -2.3
SET3	YKR029C	KNH1	P50112	268 aa		0.67	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 65.8 ms