RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W IMP1P28627 190 aa3.66□□□□□ -1.82
SSH4YKL124W ERG24P32462 438 aaKnown RBP3.66□□□□□ -1.82
SSH4YKL124W YKL102CP34249 101 aa3.66□□□□□ -1.82
SSH4YKL124W YJL218WP40892 196 aaKnown RBP3.66□□□□□ -1.82
SSH4YKL124W PIR5P46999 287 aa3.66□□□□□ -1.82
SSH4YKL124W MAK3Q03503 176 aa3.66□□□□□ -1.82
SSH4YKL124W YDR114CQ04597 100 aa3.66□□□□□ -1.82
SSH4YKL124W PBP4Q07362 185 aaKnown RBP3.66□□□□□ -1.82
SSH4YKL124W YOR186WQ08560 144 aa3.66□□□□□ -1.82
SSH4YKL124W RPL12AP0CX53 165 aaKnown RBP3.65□□□□□ -1.82
SSH4YKL124W RPL12BP0CX54 165 aa3.65□□□□□ -1.82
SSH4YKL124W SHE2P36068 246 aaKnown RBP RIP-Chip data3.65□□□□□ -1.82not detected
SSH4YKL124W UMP1P38293 148 aa3.65□□□□□ -1.82
SSH4YKL124W MBB1P39534 108 aa3.65□□□□□ -1.82
SSH4YKL124W CCS1P40202 249 aaKnown RBP3.65□□□□□ -1.82
SSH4YKL124W RFC2P40348 353 aa3.65□□□□□ -1.82
SSH4YKL124W PAM16P42949 149 aa3.65□□□□□ -1.82
SSH4YKL124W RBL2P48606 106 aaKnown RBP3.65□□□□□ -1.82
SSH4YKL124W DOC1P53068 250 aa3.65□□□□□ -1.82
SSH4YKL124W NMA1Q06178 401 aaKnown RBP3.65□□□□□ -1.82
SSH4YKL124W CTR3Q06686 241 aa3.65□□□□□ -1.82
SSH4YKL124W EAF3Q12432 401 aa3.65□□□□□ -1.82
SSH4YKL124W YBR255C-AQ3E776 120 aa3.65□□□□□ -1.82
SSH4YKL124W MIR1P23641 311 aaKnown RBP3.64□□□□□ -1.83
SSH4YKL124W ARO7P32178 256 aa3.64□□□□□ -1.83
SSH4YKL124W SYS1P41544 203 aa3.64□□□□□ -1.83
SSH4YKL124W GNA1P43577 159 aaPredicted RBP3.64□□□□□ -1.83
SSH4YKL124W LSM8P47093 109 aaKnown RBP3.64□□□□□ -1.83
SSH4YKL124W SOL1P50278 321 aa3.64□□□□□ -1.83
SSH4YKL124W CAF40P53829 373 aa3.64□□□□□ -1.83
SSH4YKL124W WSC2P53832 503 aa3.64□□□□□ -1.83
SSH4YKL124W HCH1P53834 153 aa3.64□□□□□ -1.83
SSH4YKL124W YNL184CP53876 108 aa3.64□□□□□ -1.83
SSH4YKL124W TDA1Q03533 586 aa3.64□□□□□ -1.83
SSH4YKL124W PKR1Q03880 122 aaKnown RBP3.64□□□□□ -1.83
SSH4YKL124W SDH7Q04401 133 aa3.64□□□□□ -1.83
SSH4YKL124W CNE1P27825 502 aa3.64□□□□□ -1.83
SSH4YKL124W VMA5P31412 392 aaKnown RBP3.64□□□□□ -1.83
SSH4YKL124W PRM5P40476 318 aa3.64□□□□□ -1.83
SSH4YKL124W GWT1P47026 490 aa3.64□□□□□ -1.83
SSH4YKL124W TAD2P47058 250 aa3.64□□□□□ -1.83
SSH4YKL124W OST3P48439 350 aa3.64□□□□□ -1.83
SSH4YKL124W HNT1Q04344 158 aaKnown RBP3.64□□□□□ -1.83
SSH4YKL124W YMR253CQ04835 414 aa3.64□□□□□ -1.83
SSH4YKL124W YMR320WQ04897 101 aa3.64□□□□□ -1.83
SSH4YKL124W HRD1Q08109 551 aa3.64□□□□□ -1.83
SSH4YKL124W ATG40Q99325 256 aa3.64□□□□□ -1.83
SSH4YKL124W TPI1P00942 248 aaKnown RBP3.63□□□□□ -1.83
SSH4YKL124W CYC3P06182 269 aa3.63□□□□□ -1.83
SSH4YKL124W FCY2P17064 533 aa3.63□□□□□ -1.83
SSH4YKL124W ATG22P25568 528 aa3.63□□□□□ -1.83
SSH4YKL124W POF1P25576 258 aa3.63□□□□□ -1.83
SSH4YKL124W HOM6P31116 359 aaKnown RBP3.63□□□□□ -1.83
SSH4YKL124W PRY2P36110 329 aa3.63□□□□□ -1.83
SSH4YKL124W COS8P38723 381 aa3.63□□□□□ -1.83
SSH4YKL124W SER2P42941 309 aa3.63□□□□□ -1.83
SSH4YKL124W RPA43P46669 326 aa3.63□□□□□ -1.83
SSH4YKL124W IRC18P47056 224 aa3.63□□□□□ -1.83
SSH4YKL124W APJ1P53940 528 aa3.63□□□□□ -1.83
SSH4YKL124W HSK3P69852 69 aa3.63□□□□□ -1.83
SSH4YKL124W YMR166CQ03829 368 aa3.63□□□□□ -1.83
SSH4YKL124W SRL1Q08673 210 aa3.63□□□□□ -1.83
SSH4YKL124W RKI1Q12189 258 aa3.63□□□□□ -1.83
SSH4YKL124W TIR4Q12218 487 aaPredicted RBP3.63□□□□□ -1.83
SSH4YKL124W REP2P03872 296 aa3.62□□□□□ -1.83
SSH4YKL124W BGL2P15703 313 aaKnown RBP3.62□□□□□ -1.83
SSH4YKL124W INO2P26798 304 aa3.62□□□□□ -1.83
SSH4YKL124W ECM31P38122 312 aa3.62□□□□□ -1.83
SSH4YKL124W CUE1P38428 203 aa3.62□□□□□ -1.83
SSH4YKL124W GET2P40056 285 aa3.62□□□□□ -1.83
SSH4YKL124W TTI2P47168 421 aa3.62□□□□□ -1.83
SSH4YKL124W BXI1P48558 297 aa3.62□□□□□ -1.83
SSH4YKL124W RPL21AQ02753 160 aaKnown RBP3.62□□□□□ -1.83
SSH4YKL124W FMP42Q04991 504 aa3.62□□□□□ -1.83
SSH4YKL124W ATG39Q06159 398 aa3.62□□□□□ -1.83
SSH4YKL124W RFM1Q12192 310 aa3.62□□□□□ -1.83
SSH4YKL124W RPL21BQ12672 160 aaKnown RBP3.62□□□□□ -1.83
SSH4YKL124W QRI5P32344 111 aa3.61□□□□□ -1.83
SSH4YKL124W COQ2P32378 372 aa3.61□□□□□ -1.83
SSH4YKL124W MRP49P32388 137 aa3.61□□□□□ -1.83
SSH4YKL124W YNK1P36010 153 aaKnown RBP3.61□□□□□ -1.83
SSH4YKL124W MRPL24P36525 258 aaPredicted RBP3.61□□□□□ -1.83
SSH4YKL124W SAS2P40963 338 aa3.61□□□□□ -1.83
SSH4YKL124W RSM27P53305 110 aa3.61□□□□□ -1.83
SSH4YKL124W COA4Q05809 96 aa3.61□□□□□ -1.83
SSH4YKL124W FSF1Q12029 327 aaKnown RBP3.61□□□□□ -1.83
SSH4YKL124W ATG41Q12048 136 aa3.61□□□□□ -1.83
SSH4YKL124W YCT1Q12235 531 aa3.61□□□□□ -1.83
SSH4YKL124W TOA2P32774 122 aa3.61□□□□□ -1.83
SSH4YKL124W YKL075CP36083 450 aa3.61□□□□□ -1.83
SSH4YKL124W RPL32P38061 130 aaKnown RBP3.61□□□□□ -1.83
SSH4YKL124W GPX2P38143 162 aa3.61□□□□□ -1.83
SSH4YKL124W VMA7P39111 118 aa3.61□□□□□ -1.83
SSH4YKL124W PHM8P40025 321 aa3.61□□□□□ -1.83
SSH4YKL124W ATG18P43601 500 aa3.61□□□□□ -1.83
SSH4YKL124W DIE2P50076 525 aa3.61□□□□□ -1.83
SSH4YKL124W CPD1P53314 239 aa3.61□□□□□ -1.83
SSH4YKL124W YIF1P53845 314 aaKnown RBP3.61□□□□□ -1.83
SSH4YKL124W TMA10Q06177 86 aa3.61□□□□□ -1.83
SSH4YKL124W SCP1Q08873 200 aa3.61□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 63.4 ms