RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C TMA23Q03525 211 aa4.55□□□□□ -1.68
DEF1YKL054C YLR118CQ12354 227 aa4.55□□□□□ -1.68
DEF1YKL054C PCL1P24867 279 aa4.54□□□□□ -1.68
DEF1YKL054C SRP21P32342 167 aa4.54□□□□□ -1.68
DEF1YKL054C GPI2P46961 280 aa4.54□□□□□ -1.68
DEF1YKL054C CAX4P53223 239 aa4.54□□□□□ -1.68
DEF1YKL054C YMR099CQ03161 297 aaKnown RBP4.54□□□□□ -1.68
DEF1YKL054C YDR391CQ04170 232 aa4.54□□□□□ -1.68
DEF1YKL054C FYV12Q08559 129 aa4.54□□□□□ -1.68
DEF1YKL054C IES3Q12345 250 aa4.54□□□□□ -1.68
DEF1YKL054C YNL277W-AQ3E7Z0 62 aa4.54□□□□□ -1.68
DEF1YKL054C YAR023CD6VPM8 179 aa4.54□□□□□ -1.68
DEF1YKL054C SNC2P33328 115 aa4.54□□□□□ -1.68
DEF1YKL054C SAE3P89114 91 aa4.54□□□□□ -1.68
DEF1YKL054C YKR005CQ02203 525 aa4.54□□□□□ -1.68
DEF1YKL054C PPT2Q12036 173 aa4.54□□□□□ -1.68
DEF1YKL054C FCY1Q12178 158 aa4.54□□□□□ -1.68
DEF1YKL054C YOR214CQ12282 236 aa4.54□□□□□ -1.68
DEF1YKL054C DDI2P0CH63 225 aa4.53□□□□□ -1.68
DEF1YKL054C DDI3P0CH64 225 aa4.53□□□□□ -1.68
DEF1YKL054C AIM2P39721 246 aa4.53□□□□□ -1.68
DEF1YKL054C SMD3P43321 101 aaKnown RBP4.53□□□□□ -1.68
DEF1YKL054C YER134CP40081 178 aa4.53□□□□□ -1.68
DEF1YKL054C YCL001W-BQ96VH2 84 aa4.53□□□□□ -1.68
DEF1YKL054C YEL009C-AA0A023PZF2 135 aa4.52□□□□□ -1.69
DEF1YKL054C TIM9O74700 87 aa4.52□□□□□ -1.69
DEF1YKL054C ADH3P07246 375 aaKnown RBP4.52□□□□□ -1.69
DEF1YKL054C YGR017WP53210 297 aa4.52□□□□□ -1.69
DEF1YKL054C BUD25P85052 153 aa4.52□□□□□ -1.69
DEF1YKL054C AIM36Q03798 255 aa4.52□□□□□ -1.69
DEF1YKL054C SCW10Q04951 389 aa4.52□□□□□ -1.69
DEF1YKL054C VMA11P32842 164 aa4.52□□□□□ -1.69
DEF1YKL054C MRPL17P36528 281 aa4.52□□□□□ -1.69
DEF1YKL054C YBR220CP38318 560 aa4.52□□□□□ -1.69
DEF1YKL054C YNR062CP53748 327 aa4.52□□□□□ -1.69
DEF1YKL054C YDR102CQ03864 110 aa4.52□□□□□ -1.69
DEF1YKL054C YPR114WQ06107 315 aa4.52□□□□□ -1.69
DEF1YKL054C ODC2Q99297 307 aa4.52□□□□□ -1.69
DEF1YKL054C YHR125WP38831 101 aa4.51□□□□□ -1.69
DEF1YKL054C COX4P04037 155 aa4.5□□□□□ -1.69
DEF1YKL054C YDR274CP87283 123 aa4.5□□□□□ -1.69
DEF1YKL054C SPG3Q04398 127 aaPredicted RBP4.5□□□□□ -1.69
DEF1YKL054C FSF1Q12029 327 aaKnown RBP4.5□□□□□ -1.69
DEF1YKL054C FLO11P08640 1367 aa4.5□□□□□ -1.69
DEF1YKL054C CBP6P07253 162 aaPredicted RBP4.5□□□□□ -1.69
DEF1YKL054C RPS12P48589 143 aaKnown RBP4.5□□□□□ -1.69
DEF1YKL054C VPS28Q02767 242 aa4.5□□□□□ -1.69
DEF1YKL054C GAL83Q04739 417 aa4.5□□□□□ -1.69
DEF1YKL054C TVP18Q04767 167 aa4.5□□□□□ -1.69
DEF1YKL054C YGL193CP53097 103 aa4.49□□□□□ -1.69
DEF1YKL054C ATP20Q12233 115 aa4.49□□□□□ -1.69
DEF1YKL054C HTD2P38790 280 aaKnown RBP4.49□□□□□ -1.69
DEF1YKL054C PAC10P48363 199 aa4.49□□□□□ -1.69
DEF1YKL054C AIM11P87275 137 aa4.49□□□□□ -1.69
DEF1YKL054C SMD1Q02260 146 aaPredicted RBP4.49□□□□□ -1.69
DEF1YKL054C YTH1Q06102 208 aaPredicted RBP4.49□□□□□ -1.69
DEF1YKL054C ZEO1Q08245 113 aa4.49□□□□□ -1.69
DEF1YKL054C BUD4P47136 1447 aa4.49□□□□□ -1.69
DEF1YKL054C YLR042CQ07990 161 aa4.48□□□□□ -1.69
DEF1YKL054C YER039C-AP0CD97 72 aa4.48□□□□□ -1.69
DEF1YKL054C HSP12P22943 109 aaKnown RBP4.48□□□□□ -1.69
DEF1YKL054C FMP46P36141 133 aaKnown RBP4.48□□□□□ -1.69
DEF1YKL054C ARC15P40518 154 aaRIP-Chip data4.48□□□□□ -1.69not detected
DEF1YKL054C BOL1Q3E793 110 aa4.48□□□□□ -1.69
DEF1YKL054C SSN2P38931 1420 aa4.47□□□□□ -1.69
DEF1YKL054C SPS2P08459 502 aa4.47□□□□□ -1.69
DEF1YKL054C DDR48P18899 430 aaKnown RBP4.47□□□□□ -1.69
DEF1YKL054C YEL028WP39989 153 aa4.47□□□□□ -1.69
DEF1YKL054C AIF1P52923 378 aa4.47□□□□□ -1.69
DEF1YKL054C EST3Q03096 181 aa4.47□□□□□ -1.69
DEF1YKL054C YML122CQ03207 126 aa4.47□□□□□ -1.69
DEF1YKL054C YMR253CQ04835 414 aa4.47□□□□□ -1.69
DEF1YKL054C ANT1Q06497 328 aa4.47□□□□□ -1.69
DEF1YKL054C FCF2Q12035 217 aaPredicted RBP4.47□□□□□ -1.69
DEF1YKL054C RAD10P06838 210 aa4.46□□□□□ -1.69
DEF1YKL054C CPA1P07258 411 aaKnown RBP4.46□□□□□ -1.69
DEF1YKL054C AHT1P29589 182 aa4.46□□□□□ -1.69
DEF1YKL054C GVP36P40531 326 aaKnown RBP4.46□□□□□ -1.69
DEF1YKL054C MPC3P53311 146 aa4.46□□□□□ -1.69
DEF1YKL054C ECO1P43605 281 aa4.46□□□□□ -1.7
DEF1YKL054C RSM27P53305 110 aa4.46□□□□□ -1.7
DEF1YKL054C RNH202Q05635 350 aa4.46□□□□□ -1.7
DEF1YKL054C MEU1Q07938 337 aaKnown RBP RIP-Chip data4.46□□□□□ -1.7not detected
DEF1YKL054C NSP1P14907 823 aaKnown RBP4.45□□□□□ -1.7
DEF1YKL054C ETR1P38071 380 aa4.45□□□□□ -1.7
DEF1YKL054C GEP7P53171 287 aa4.45□□□□□ -1.7
DEF1YKL054C DAD3P69850 94 aa4.45□□□□□ -1.7
DEF1YKL054C SYM1Q06563 197 aa4.45□□□□□ -1.7
DEF1YKL054C YOR268CQ08734 132 aa4.45□□□□□ -1.7
DEF1YKL054C POR1P04840 283 aaKnown RBP4.45□□□□□ -1.7
DEF1YKL054C ECM34P38728 170 aa4.45□□□□□ -1.7
DEF1YKL054C EAF6P47128 113 aa4.45□□□□□ -1.7
DEF1YKL054C VAR1P02381 398 aa4.44□□□□□ -1.7
DEF1YKL054C YFR045WP43617 309 aa4.44□□□□□ -1.7
DEF1YKL054C DSK2P48510 373 aa4.44□□□□□ -1.7
DEF1YKL054C MRS4P23500 304 aa4.44□□□□□ -1.7
DEF1YKL054C UMP1P38293 148 aa4.44□□□□□ -1.7
DEF1YKL054C NSA2P40078 261 aaKnown RBP4.43□□□□□ -1.7
DEF1YKL054C YER135CP40082 130 aa4.43□□□□□ -1.7
DEF1YKL054C MRPS16Q02608 121 aa4.43□□□□□ -1.7
Retrieved 100 of 5,963 RNA–protein pairs in 122.5 ms