RNA–Protein interactions for RNA: YDR499W

LCD1, Transcript of Essential protein required for the DNA integrity checkpoint pathways, yeast

Gene LCD1, Length 2,244 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCD1	YDR499W	HUA1	P40325	198 aa		0.51	□□□□□ -2.33
LCD1	YDR499W	FMP32	P43557	207 aa		0.51	□□□□□ -2.33
LCD1	YDR499W	YOR342C	Q12182	319 aa		0.51	□□□□□ -2.33
LCD1	YDR499W	ATP20	Q12233	115 aa		0.51	□□□□□ -2.33
LCD1	YDR499W	MPD1	Q12404	318 aa	Known RBP	0.51	□□□□□ -2.33
LCD1	YDR499W	COA3	Q3E7B2	85 aa		0.51	□□□□□ -2.33
LCD1	YDR499W	YLR422W	Q06409	1932 aa		0.51	□□□□□ -2.33
LCD1	YDR499W	SHG1	P38337	142 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	MPM1	P40364	252 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	HOP2	P53187	214 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	SNO1	Q03144	224 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	YDR391C	Q04170	232 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	GRX8	Q05926	109 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	SHH4	Q06236	168 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	BRX1	Q08235	291 aa	Known RBP	0.5	□□□□□ -2.33
LCD1	YDR499W	FYV12	Q08559	129 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	DAS2	Q12084	232 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	YOR015W	Q12169	119 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	SEN2	P16658	377 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	YCR023C	P25351	611 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	AHC2	P25649	128 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	RRT1	P38192	103 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	NSA2	P40078	261 aa	Known RBP	0.5	□□□□□ -2.33
LCD1	YDR499W	PIR1	Q03178	341 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	RRP17	Q04031	235 aa	Predicted RBP	0.5	□□□□□ -2.33
LCD1	YDR499W	DGK1	Q12382	290 aa		0.5	□□□□□ -2.33
LCD1	YDR499W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	0.49	□□□□□ -2.33	not detected
LCD1	YDR499W	STF2	P16965	84 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	STP22	P25604	385 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	ATP7	P30902	174 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	YKL102C	P34249	101 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	NVJ1	P38881	321 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	RFC2	P40348	353 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	SBH1	P52870	82 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	DML1	Q03652	475 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	GPI17	Q04080	534 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	YET3	Q07451	203 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	CLG1	P35190	452 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	YBR242W	P38331	238 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	YGL235W	P53071	178 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	YHP1	Q04116	353 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	GAL83	Q04739	417 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	UPS1	Q05776	175 aa		0.49	□□□□□ -2.33
LCD1	YDR499W	SEC14	P24280	304 aa	Known RBP	0.48	□□□□□ -2.33
LCD1	YDR499W	HSP30	P25619	332 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	UBC8	P28263	218 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	YBL010C	P32788	280 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	MRPL15	P36523	253 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	FYV4	P38783	130 aa	Predicted RBP	0.48	□□□□□ -2.33
LCD1	YDR499W	YNL200C	P40165	246 aa	Known RBP	0.48	□□□□□ -2.33
LCD1	YDR499W	NSE4	P43124	402 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	MET31	Q03081	177 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	HPT1	Q04178	221 aa	Known RBP	0.48	□□□□□ -2.33
LCD1	YDR499W	LCL2	Q08045	131 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	GRE1	Q08969	168 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	YPR203W	Q08994	102 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	ATG41	Q12048	136 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	YOR381W-A	Q3E804	55 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	TRR1	P29509	319 aa	Known RBP	0.48	□□□□□ -2.33
LCD1	YDR499W	CPR5	P35176	225 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	ETR1	P38071	380 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	MAK5	P38112	773 aa	Predicted RBP	0.48	□□□□□ -2.33
LCD1	YDR499W	CCS1	P40202	249 aa	Known RBP	0.48	□□□□□ -2.33
LCD1	YDR499W	POG1	P40473	351 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	JAC1	P53193	184 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	GIM3	P53900	129 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	YOR214C	Q12282	236 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	TAR1	Q8TGM6	124 aa		0.48	□□□□□ -2.33
LCD1	YDR499W	MAK31	P23059	88 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.47	□□□□□ -2.33	not detected
LCD1	YDR499W	YHL037C	P38733	133 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	TTI2	P47168	421 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	SOL1	P50278	321 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	SBH2	P52871	88 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	YKR005C	Q02203	525 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	VPS28	Q02767	242 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	RIM9	Q04734	239 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	ELP6	Q04868	273 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	YMR030W-A	Q3E760	96 aa		0.47	□□□□□ -2.33
LCD1	YDR499W	DUR1,2	P32528	1835 aa	Known RBP	0.47	□□□□□ -2.33
LCD1	YDR499W	YER188C-A	P0C0V2	99 aa		0.46	□□□□□ -2.34
LCD1	YDR499W	SEC72	P39742	193 aa	Known RBP	0.46	□□□□□ -2.34
LCD1	YDR499W	RPL37B	P51402	88 aa	Known RBP	0.46	□□□□□ -2.34
LCD1	YDR499W	GRX5	Q02784	150 aa		0.46	□□□□□ -2.34
LCD1	YDR499W	YPR127W	Q06494	345 aa		0.46	□□□□□ -2.34
LCD1	YDR499W	AHT1	P29589	182 aa		0.46	□□□□□ -2.34
LCD1	YDR499W	YIP3	P53633	176 aa		0.46	□□□□□ -2.34
LCD1	YDR499W	AIM36	Q03798	255 aa		0.46	□□□□□ -2.34
LCD1	YDR499W	HFA1	P32874	2273 aa		0.45	□□□□□ -2.34
LCD1	YDR499W	YFL051C	P43552	160 aa		0.45	□□□□□ -2.34
LCD1	YDR499W	FIT1	Q04433	528 aa		0.45	□□□□□ -2.34
LCD1	YDR499W	RAD51	P25454	400 aa		0.45	□□□□□ -2.34
LCD1	YDR499W	TIM13	P53299	105 aa		0.45	□□□□□ -2.34
LCD1	YDR499W	ATG38	Q05789	226 aa	Known RBP	0.45	□□□□□ -2.34
LCD1	YDR499W	PEX11	Q12462	236 aa		0.45	□□□□□ -2.34
LCD1	YDR499W	RAD6	P06104	172 aa		0.44	□□□□□ -2.34
LCD1	YDR499W	RPL35A	P0CX84	120 aa	Known RBP	0.44	□□□□□ -2.34
LCD1	YDR499W	RPL35B	P0CX85	120 aa	Known RBP	0.44	□□□□□ -2.34
LCD1	YDR499W	UGX2	P32772	223 aa		0.44	□□□□□ -2.34
LCD1	YDR499W	EGD2	P38879	174 aa	Known RBP	0.44	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 53 ms