RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT3	YDR392W	OCA2	P53949	197 aa		3.13	□□□□□ -1.91
SPT3	YDR392W	VBA1	Q04301	562 aa		3.13	□□□□□ -1.91
SPT3	YDR392W	PHO92	Q06390	306 aa		3.13	□□□□□ -1.91
SPT3	YDR392W	YPR127W	Q06494	345 aa		3.13	□□□□□ -1.91
SPT3	YDR392W	THP1	Q08231	455 aa		3.13	□□□□□ -1.91
SPT3	YDR392W	YPL257W	Q08974	193 aa		3.13	□□□□□ -1.91
SPT3	YDR392W	EAF3	Q12432	401 aa		3.13	□□□□□ -1.91
SPT3	YDR392W	VMA9	Q3E7B6	73 aa		3.13	□□□□□ -1.91
SPT3	YDR392W	URA6	P15700	204 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	RPB3	P16370	318 aa	Known RBP	3.12	□□□□□ -1.91
SPT3	YDR392W	PRE1	P22141	198 aa	Known RBP	3.12	□□□□□ -1.91
SPT3	YDR392W	CPR2	P23285	205 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	AHC2	P25649	128 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	REC114	P32841	428 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	SWD2	P36104	329 aa	Predicted RBP	3.12	□□□□□ -1.91
SPT3	YDR392W	MRPL11	P36521	249 aa	Predicted RBP	3.12	□□□□□ -1.91
SPT3	YDR392W	RIB5	P38145	238 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	ATG8	P38182	117 aa	RIP-Chip data	3.12	□□□□□ -1.91	not detected
SPT3	YDR392W	VMA21	P41806	77 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	TAD2	P47058	250 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	YGL159W	P53110	370 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	SEN15	Q04675	128 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	YLR179C	Q06252	201 aa	Known RBP	3.12	□□□□□ -1.91
SPT3	YDR392W	HRT1	Q08273	121 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	RAD28	Q12021	506 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	YPS3	Q12303	508 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	AGC1	Q12482	902 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	SNF8	Q12483	233 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	COA6	Q3E846	104 aa		3.12	□□□□□ -1.91
SPT3	YDR392W	HTB1	P02293	131 aa	Known RBP	3.11	□□□□□ -1.91
SPT3	YDR392W	HTB2	P02294	131 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	CKS1	P20486	150 aa	Known RBP	3.11	□□□□□ -1.91
SPT3	YDR392W	RPS2	P25443	254 aa	Known RBP	3.11	□□□□□ -1.91
SPT3	YDR392W	MSK1	P32048	576 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	FRE2	P36033	711 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	YKL162C	P36052	402 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	RRG9	P40156	214 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	EMC5	P40540	141 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	SLX9	P53251	210 aa	Predicted RBP	3.11	□□□□□ -1.91
SPT3	YDR392W	NRK1	P53915	240 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	YDR366C	P87287	132 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	ODC1	Q03028	310 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	SGF11	Q03067	99 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	SNO1	Q03144	224 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	ANT1	Q06497	328 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	MRX9	Q07349	420 aa	Known RBP	3.11	□□□□□ -1.91
SPT3	YDR392W	DCI1	Q08558	271 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	YPL119C-A	Q3E751	87 aa		3.11	□□□□□ -1.91
SPT3	YDR392W	TFB5	Q3E7C1	72 aa	Predicted RBP	3.11	□□□□□ -1.91
SPT3	YDR392W	ADH3	P07246	375 aa	Known RBP	3.1	□□□□□ -1.91
SPT3	YDR392W	HAP3	P13434	144 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	CDC50	P25656	391 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	MRP17	P28778	131 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	OAC1	P32332	324 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	MRPL28	P36527	147 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	CHL4	P38907	458 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	SUR2	P38992	349 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	GCV3	P39726	170 aa	Predicted RBP	3.1	□□□□□ -1.91
SPT3	YDR392W	AIM10	P39965	576 aa	Known RBP	3.1	□□□□□ -1.91
SPT3	YDR392W	YNL194C	P40169	301 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	RFC2	P40348	353 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	HXT14	P42833	540 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	YJR011C	P47086	261 aa	Predicted RBP	3.1	□□□□□ -1.91
SPT3	YDR392W	NUP57	P48837	541 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	YGL101W	P53144	215 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	MPC1	P53157	130 aa	Known RBP	3.1	□□□□□ -1.91
SPT3	YDR392W	LIP2	Q06005	328 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	RRT8	Q08219	342 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	YOL114C	Q12322	202 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	TFC7	Q12415	435 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	YDR010C	Q12426	110 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	YJR112W-A	Q3E743	109 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	YLR099W-A	Q3E798	87 aa		3.1	□□□□□ -1.91
SPT3	YDR392W	RPL31A	P0C2H8	113 aa	Known RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	RPL31B	P0C2H9	113 aa	Known RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	NHP6B	P11633	99 aa	Known RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	CKA1	P15790	372 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	RRP7	P25368	297 aa	Predicted RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	RPS20	P38701	121 aa	Known RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	ASP1	P38986	381 aa	Predicted RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	YIL060W	P40519	144 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	ERG25	P53045	309 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	FMP41	P53889	259 aa	Known RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	GPI15	P53961	229 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	TPS1	Q00764	495 aa	Known RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	VPS28	Q02767	242 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	CUE4	Q04201	117 aa	Predicted RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	FIT1	Q04433	528 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	RNH202	Q05635	350 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	FRQ1	Q06389	190 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	NOC4	Q06512	552 aa	Predicted RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	YLR413W	Q06689	675 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	RFU1	Q08003	200 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	POM33	Q12164	279 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	SIA1	Q12212	622 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	TIR4	Q12218	487 aa	Predicted RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	YCT1	Q12235	531 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	WIP1	Q2V2P8	89 aa		3.09	□□□□□ -1.91
SPT3	YDR392W	YDL085C-A	Q3E7B7	68 aa	Known RBP	3.09	□□□□□ -1.91
SPT3	YDR392W	YIL134C-A	Q45U18	67 aa		3.09	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 89.6 ms