RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W DGK1Q12382 290 aa0.05□□□□□ -2.4
PRP42YDR235W IGO2Q9P305 131 aa0.05□□□□□ -2.4
PRP42YDR235W JIP3O13555 125 aa0.04□□□□□ -2.4
PRP42YDR235W RPS24AP0CX31 135 aaKnown RBP0.04□□□□□ -2.4
PRP42YDR235W RPS24BP0CX32 135 aaKnown RBP0.04□□□□□ -2.4
PRP42YDR235W CBF1P17106 351 aa0.04□□□□□ -2.4
PRP42YDR235W NTG1P31378 399 aa0.04□□□□□ -2.4
PRP42YDR235W TMA22P47089 198 aaPredicted RBP0.04□□□□□ -2.4
PRP42YDR235W TDA4P47153 279 aa0.04□□□□□ -2.4
PRP42YDR235W PGA2P53903 129 aa0.04□□□□□ -2.4
PRP42YDR235W HHT1P61830 136 aa0.04□□□□□ -2.4
PRP42YDR235W TIM11P81449 96 aaPredicted RBP0.04□□□□□ -2.4
PRP42YDR235W YHP1Q04116 353 aa0.04□□□□□ -2.4
PRP42YDR235W ELP6Q04868 273 aa0.04□□□□□ -2.4
PRP42YDR235W YMR315WQ04869 349 aaKnown RBP0.04□□□□□ -2.4
PRP42YDR235W UPS1Q05776 175 aa0.04□□□□□ -2.4
PRP42YDR235W YPR127WQ06494 345 aa0.04□□□□□ -2.4
PRP42YDR235W DAS2Q12084 232 aa0.04□□□□□ -2.4
PRP42YDR235W GIS3Q12418 502 aa0.04□□□□□ -2.4
PRP42YDR235W YMR030W-AQ3E760 96 aa0.04□□□□□ -2.4
PRP42YDR235W YOL013W-AP0C272 63 aaPredicted RBP0.03□□□□□ -2.4
PRP42YDR235W YCR001WP25347 104 aa0.03□□□□□ -2.4
PRP42YDR235W CPR5P35176 225 aa0.03□□□□□ -2.4
PRP42YDR235W YKR070WP36151 352 aaKnown RBP0.03□□□□□ -2.4
PRP42YDR235W FYV4P38783 130 aaPredicted RBP0.03□□□□□ -2.4
PRP42YDR235W NSA2P40078 261 aaKnown RBP0.03□□□□□ -2.4
PRP42YDR235W YNL200CP40165 246 aaKnown RBP0.03□□□□□ -2.4
PRP42YDR235W NSE4P43124 402 aa0.03□□□□□ -2.4
PRP42YDR235W SOL1P50278 321 aa0.03□□□□□ -2.4
PRP42YDR235W YNL184CP53876 108 aa0.03□□□□□ -2.4
PRP42YDR235W YDC1Q02896 317 aa0.03□□□□□ -2.4
PRP42YDR235W TMA23Q03525 211 aa0.03□□□□□ -2.4
PRP42YDR235W ARO80Q04052 950 aa0.03□□□□□ -2.4
PRP42YDR235W KEI1Q06346 221 aa0.03□□□□□ -2.4
PRP42YDR235W ATG41Q12048 136 aa0.03□□□□□ -2.4
PRP42YDR235W ATP20Q12233 115 aa0.03□□□□□ -2.4
PRP42YDR235W RUD3Q12234 484 aaKnown RBP0.03□□□□□ -2.4
PRP42YDR235W SNF2P22082 1703 aa0.03□□□□□ -2.4
PRP42YDR235W MATALPHA2P0CY08 210 aa0.02□□□□□ -2.41
PRP42YDR235W HMLALPHA2P0CY09 210 aa0.02□□□□□ -2.41
PRP42YDR235W APA2P22108 325 aa0.02□□□□□ -2.41
PRP42YDR235W PRE1P22141 198 aaKnown RBP0.02□□□□□ -2.41
PRP42YDR235W ADE1P27616 306 aa0.02□□□□□ -2.41
PRP42YDR235W CLG1P35190 452 aa0.02□□□□□ -2.41
PRP42YDR235W SHB17P36136 271 aaKnown RBP0.02□□□□□ -2.41
PRP42YDR235W RRT1P38192 103 aa0.02□□□□□ -2.41
PRP42YDR235W NSG1P38837 291 aa0.02□□□□□ -2.41
PRP42YDR235W HHY1P39982 102 aa0.02□□□□□ -2.41
PRP42YDR235W CCS1P40202 249 aaKnown RBP0.02□□□□□ -2.41
PRP42YDR235W APS3P47064 194 aa0.02□□□□□ -2.41
PRP42YDR235W NRK1P53915 240 aa0.02□□□□□ -2.41
PRP42YDR235W GRX5Q02784 150 aa0.02□□□□□ -2.41
PRP42YDR235W MRPS17Q03246 237 aaPredicted RBP0.02□□□□□ -2.41
PRP42YDR235W DML1Q03652 475 aa0.02□□□□□ -2.41
PRP42YDR235W GRX3Q03835 250 aa0.02□□□□□ -2.41
PRP42YDR235W AVO2Q04749 426 aa0.02□□□□□ -2.41
PRP42YDR235W YOL024WQ08172 172 aa0.02□□□□□ -2.41
PRP42YDR235W FCY1Q12178 158 aa0.02□□□□□ -2.41
PRP42YDR235W YOR342CQ12182 319 aa0.02□□□□□ -2.41
PRP42YDR235W YLR412C-AQ3E742 68 aa0.02□□□□□ -2.41
PRP42YDR235W YOR381W-AQ3E804 55 aa0.02□□□□□ -2.41
PRP42YDR235W YPR014CQ6B0W2 109 aa0.02□□□□□ -2.41
PRP42YDR235W HFA1P32874 2273 aa0.02□□□□□ -2.41
PRP42YDR235W QCR7P00128 127 aa0.02□□□□□ -2.41
PRP42YDR235W GCY1P14065 312 aaKnown RBP RIP-Chip data0.02□□□□□ -2.41not detected
PRP42YDR235W MAK31P23059 88 aa0.02□□□□□ -2.41
PRP42YDR235W TRX3P25372 127 aa0.02□□□□□ -2.41
PRP42YDR235W HSP30P25619 332 aa0.02□□□□□ -2.41
PRP42YDR235W YKR041WP36134 250 aa0.02□□□□□ -2.41
PRP42YDR235W POG1P40473 351 aa0.02□□□□□ -2.41
PRP42YDR235W GLC8P41818 229 aa0.02□□□□□ -2.41
PRP42YDR235W YGL230CP53074 147 aa0.02□□□□□ -2.41
PRP42YDR235W AIM34Q03673 198 aa0.02□□□□□ -2.41
PRP42YDR235W RIM9Q04734 239 aa0.02□□□□□ -2.41
PRP42YDR235W GAL83Q04739 417 aa0.02□□□□□ -2.41
PRP42YDR235W CMC4Q3E7A9 73 aa0.02□□□□□ -2.41
PRP42YDR235W YHR213W-BQ8TGK1 99 aa0.02□□□□□ -2.41
PRP42YDR235W RIB3Q99258 208 aa0.02□□□□□ -2.41
PRP42YDR235W GSC2P40989 1895 aa0.01□□□□□ -2.41
PRP42YDR235W RIF1P29539 1916 aa0.01□□□□□ -2.41
PRP42YDR235W TAH1P25638 111 aaPredicted RBP0.01□□□□□ -2.41
PRP42YDR235W YRA2P36036 203 aaKnown RBP RIP-Chip data0.01□□□□□ -2.41not detected
PRP42YDR235W ATG8P38182 117 aaRIP-Chip data0.01□□□□□ -2.41not detected
PRP42YDR235W MOB1P40484 314 aa0.01□□□□□ -2.41
PRP42YDR235W CIN5P40917 295 aa0.01□□□□□ -2.41
PRP42YDR235W DIE2P50076 525 aa0.01□□□□□ -2.41
PRP42YDR235W RTC4P53850 401 aa0.01□□□□□ -2.41
PRP42YDR235W PGA1P53896 198 aa0.01□□□□□ -2.41
PRP42YDR235W YKR005CQ02203 525 aa0.01□□□□□ -2.41
PRP42YDR235W VPS28Q02767 242 aa0.01□□□□□ -2.41
PRP42YDR235W SEN15Q04675 128 aa0.01□□□□□ -2.41
PRP42YDR235W RNH1Q04740 348 aa0.01□□□□□ -2.41
PRP42YDR235W PRM3Q08931 133 aa0.01□□□□□ -2.41
PRP42YDR235W RPL43AP0CX25 92 aaKnown RBP0□□□□□ -2.41
PRP42YDR235W RPL43BP0CX26 92 aa0□□□□□ -2.41
PRP42YDR235W INO4P13902 151 aa0□□□□□ -2.41
PRP42YDR235W RPB4P20433 221 aaPredicted RBP0□□□□□ -2.41
PRP42YDR235W CAF4P36130 643 aa0□□□□□ -2.41
PRP42YDR235W CSH1P38287 376 aa0□□□□□ -2.41
PRP42YDR235W GLR1P41921 483 aaKnown RBP0□□□□□ -2.41
Retrieved 100 of 5,963 RNA–protein pairs in 25.7 ms