RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	RDI1	Q12434	202 aa		1.26	□□□□□ -2.21
NCL1	YBL024W	UBC6	P33296	250 aa	Predicted RBP	1.25	□□□□□ -2.21
NCL1	YBL024W	YPL073C	P40323	161 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	CUP9	P41817	306 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	SBH1	P52870	82 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	YGL235W	P53071	178 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	YNL033W	P53964	284 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	PLP1	Q04004	230 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	ATP20	Q12233	115 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	BNI1	P41832	1953 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	TMA19	P35691	167 aa	Known RBP	1.25	□□□□□ -2.21
NCL1	YBL024W	FYV4	P38783	130 aa	Predicted RBP	1.25	□□□□□ -2.21
NCL1	YBL024W	EDC3	P39998	551 aa	Known RBP	1.25	□□□□□ -2.21
NCL1	YBL024W	YFH7	P43591	353 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	GAL83	Q04739	417 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	YLR162W	Q06235	118 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	YLR053C	Q12026	108 aa		1.25	□□□□□ -2.21
NCL1	YBL024W	YCR023C	P25351	611 aa		1.24	□□□□□ -2.21
NCL1	YBL024W	NSA2	P40078	261 aa	Known RBP	1.24	□□□□□ -2.21
NCL1	YBL024W	THI74	Q04083	370 aa		1.24	□□□□□ -2.21
NCL1	YBL024W	CSI2	Q08054	341 aa		1.24	□□□□□ -2.21
NCL1	YBL024W	DER1	P38307	211 aa		1.24	□□□□□ -2.21
NCL1	YBL024W	EFM5	P53200	248 aa	Known RBP	1.24	□□□□□ -2.21
NCL1	YBL024W	MPA43	P53583	542 aa	Predicted RBP	1.24	□□□□□ -2.21
NCL1	YBL024W	YPR174C	Q06616	221 aa	Predicted RBP	1.24	□□□□□ -2.21
NCL1	YBL024W	RPS28B	P0C0X0	67 aa	Known RBP	1.23	□□□□□ -2.21
NCL1	YBL024W	STP22	P25604	385 aa		1.23	□□□□□ -2.21
NCL1	YBL024W	RRT1	P38192	103 aa		1.23	□□□□□ -2.21
NCL1	YBL024W	YHL018W	P38744	120 aa	Predicted RBP	1.23	□□□□□ -2.21
NCL1	YBL024W	YGL101W	P53144	215 aa		1.23	□□□□□ -2.21
NCL1	YBL024W	NSL1	Q12143	216 aa		1.23	□□□□□ -2.21
NCL1	YBL024W	YPR013C	Q12145	317 aa		1.23	□□□□□ -2.21
NCL1	YBL024W	YOR214C	Q12282	236 aa		1.23	□□□□□ -2.21
NCL1	YBL024W	RPS28A	Q3E7X9	67 aa	Predicted RBP	1.23	□□□□□ -2.21
NCL1	YBL024W	DNF1	P32660	1571 aa		1.23	□□□□□ -2.21
NCL1	YBL024W	MDS3	P53094	1487 aa		1.23	□□□□□ -2.21
NCL1	YBL024W	MMS1	Q06211	1407 aa		1.23	□□□□□ -2.21
NCL1	YBL024W	FIG1	P38224	298 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	YBR220C	P38318	560 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	SLM6	P38343	150 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	YER135C	P40082	130 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	XPT1	P47165	209 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	DAD4	P69851	72 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	YPR127W	Q06494	345 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	PRP11	Q07350	266 aa	Predicted RBP	1.22	□□□□□ -2.21
NCL1	YBL024W	PST2	Q12335	198 aa	Known RBP	1.22	□□□□□ -2.21
NCL1	YBL024W	IRC20	Q06554	1556 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	MSB2	P32334	1306 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	COX8	P04039	78 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	UBI4	P0CG63	381 aa	Known RBP	1.22	□□□□□ -2.21
NCL1	YBL024W	BAT2	P47176	376 aa	Known RBP	1.22	□□□□□ -2.21
NCL1	YBL024W	THG1	P53215	237 aa	Known RBP	1.22	□□□□□ -2.21
NCL1	YBL024W	TMA20	P89886	181 aa	Predicted RBP	1.22	□□□□□ -2.21
NCL1	YBL024W	FIT2	Q08906	153 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	YPR202W	Q08993	238 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	LTE1	P07866	1435 aa		1.22	□□□□□ -2.21
NCL1	YBL024W	HSP30	P25619	332 aa		1.21	□□□□□ -2.22
NCL1	YBL024W	ORM1	P53224	222 aa		1.21	□□□□□ -2.22
NCL1	YBL024W	YKR005C	Q02203	525 aa		1.21	□□□□□ -2.22
NCL1	YBL024W	VPS28	Q02767	242 aa		1.21	□□□□□ -2.22
NCL1	YBL024W	MAK3	Q03503	176 aa		1.21	□□□□□ -2.22
NCL1	YBL024W	UPS2	P35200	230 aa		1.2	□□□□□ -2.22
NCL1	YBL024W	TIM13	P53299	105 aa		1.2	□□□□□ -2.22
NCL1	YBL024W	PET20	Q99373	253 aa		1.2	□□□□□ -2.22
NCL1	YBL024W	FAS1	P07149	2051 aa	Known RBP	1.2	□□□□□ -2.22
NCL1	YBL024W	MYO2	P19524	1574 aa	Known RBP	1.2	□□□□□ -2.22
NCL1	YBL024W	MDM35	O60200	86 aa		1.2	□□□□□ -2.22
NCL1	YBL024W	YOL162W	P0CF19	215 aa		1.2	□□□□□ -2.22
NCL1	YBL024W	RPL2A	P0CX45	254 aa	Known RBP	1.2	□□□□□ -2.22
NCL1	YBL024W	RPL2B	P0CX46	254 aa	Known RBP	1.2	□□□□□ -2.22
NCL1	YBL024W	YGL010W	P25338	174 aa		1.2	□□□□□ -2.22
NCL1	YBL024W	SBH2	P52871	88 aa		1.2	□□□□□ -2.22
NCL1	YBL024W	YHR007C-A	Q07074	71 aa		1.2	□□□□□ -2.22
NCL1	YBL024W	EFG1	Q3E705	233 aa	Known RBP	1.2	□□□□□ -2.22
NCL1	YBL024W	YOR381W-A	Q3E804	55 aa		1.2	□□□□□ -2.22
NCL1	YBL024W	TAF2	P23255	1407 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	QCR8	P08525	94 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	GSP2	P32836	220 aa	Known RBP	1.19	□□□□□ -2.22
NCL1	YBL024W	NUF2	P33895	451 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	YEL028W	P39989	153 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	RPL13B	P40212	199 aa	Known RBP	1.19	□□□□□ -2.22
NCL1	YBL024W	LSM3	P57743	89 aa	Known RBP	1.19	□□□□□ -2.22
NCL1	YBL024W	RIM9	Q04734	239 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	YOR015W	Q12169	119 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	RPL13A	Q12690	199 aa	Predicted RBP	1.19	□□□□□ -2.22
NCL1	YBL024W	TY1B-DR4	Q07793	1604 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	GPA2	P10823	449 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	SFK1	P35735	353 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	GLR1	P41921	483 aa	Known RBP	1.19	□□□□□ -2.22
NCL1	YBL024W	PIR1	Q03178	341 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	YDR476C	Q03362	224 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	UPS1	Q05776	175 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	YLR046C	Q12253	270 aa		1.19	□□□□□ -2.22
NCL1	YBL024W	BPT1	P14772	1559 aa		1.18	□□□□□ -2.22
NCL1	YBL024W	RAD6	P06104	172 aa		1.18	□□□□□ -2.22
NCL1	YBL024W	RIO2	P40160	425 aa	Known RBP	1.18	□□□□□ -2.22
NCL1	YBL024W	NSE4	P43124	402 aa		1.18	□□□□□ -2.22
NCL1	YBL024W	DML1	Q03652	475 aa		1.18	□□□□□ -2.22
NCL1	YBL024W	SYM1	Q06563	197 aa		1.18	□□□□□ -2.22
NCL1	YBL024W	PEP1	P32319	1579 aa		1.18	□□□□□ -2.22

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms