RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 YPL229WQ99395 206 aa-3.84□□□□□ -3.02
snR40snR40 TY4B-JP47024 1803 aa-3.84□□□□□ -3.02
snR40snR40 CFT1Q06632 1357 aaKnown RBP-3.85□□□□□ -3.03
snR40snR40 ADO1P47143 340 aaKnown RBP-3.85□□□□□ -3.03
snR40snR40 SPG4Q04438 115 aa-3.85□□□□□ -3.03
snR40snR40 YCR108CQ3E819 63 aa-3.85□□□□□ -3.03
snR40snR40 MAK31P23059 88 aa-3.86□□□□□ -3.03
snR40snR40 SEC17P32602 292 aa-3.86□□□□□ -3.03
snR40snR40 YHR173CP38864 112 aa-3.86□□□□□ -3.03
snR40snR40 GPI14P47088 403 aaKnown RBP-3.86□□□□□ -3.03
snR40snR40 YNL033WP53964 284 aa-3.86□□□□□ -3.03
snR40snR40 TFB5Q3E7C1 72 aaPredicted RBP-3.86□□□□□ -3.03
snR40snR40 SEY1Q99287 776 aa-3.86□□□□□ -3.03
snR40snR40 EMC4P53073 190 aa-3.87□□□□□ -3.03
snR40snR40 YHP1Q04116 353 aa-3.87□□□□□ -3.03
snR40snR40 TAF2P23255 1407 aa-3.87□□□□□ -3.03
snR40snR40 ATP15P21306 62 aa-3.88□□□□□ -3.03
snR40snR40 RMD6P39975 231 aa-3.88□□□□□ -3.03
snR40snR40 COA1P40452 197 aa-3.88□□□□□ -3.03
snR40snR40 GET1P53192 235 aa-3.88□□□□□ -3.03
snR40snR40 RPL6BP05739 176 aaKnown RBP-3.89□□□□□ -3.03
snR40snR40 SUA7P29055 345 aaPredicted RBP-3.89□□□□□ -3.03
snR40snR40 RPC25P35718 212 aa-3.89□□□□□ -3.03
snR40snR40 SNZ2P53824 298 aa-3.89□□□□□ -3.03
snR40snR40 RPL6AQ02326 176 aaKnown RBP-3.89□□□□□ -3.03
snR40snR40 YMR253CQ04835 414 aa-3.89□□□□□ -3.03
snR40snR40 YOL107WQ12239 342 aa-3.89□□□□□ -3.03
snR40snR40 IKI3Q06706 1349 aaKnown RBP-3.9□□□□□ -3.03
snR40snR40 GDT1P38301 280 aaPredicted RBP-3.9□□□□□ -3.03
snR40snR40 NSE4P43124 402 aa-3.9□□□□□ -3.03
snR40snR40 ARL3Q02804 198 aa-3.9□□□□□ -3.03
snR40snR40 BER1Q06688 274 aaKnown RBP-3.9□□□□□ -3.03
snR40snR40 RRP36Q12481 300 aaPredicted RBP-3.9□□□□□ -3.03
snR40snR40 YFR009W-AP0C5M9 85 aa-3.91□□□□□ -3.04
snR40snR40 YCR016WP25617 290 aaKnown RBP-3.91□□□□□ -3.04
snR40snR40 GOS1P38736 223 aa-3.91□□□□□ -3.04
snR40snR40 RFC4P40339 323 aaKnown RBP-3.91□□□□□ -3.04
snR40snR40 ICS3P47034 131 aa-3.91□□□□□ -3.04
snR40snR40 SPC19Q03954 165 aa-3.91□□□□□ -3.04
snR40snR40 YNG1Q08465 219 aa-3.91□□□□□ -3.04
snR40snR40 YOR015WQ12169 119 aa-3.91□□□□□ -3.04
snR40snR40 PAA1Q12447 191 aaKnown RBP-3.91□□□□□ -3.04
snR40snR40 ADF1Q2V2Q1 113 aa-3.91□□□□□ -3.04
snR40snR40 RNR2P09938 399 aaKnown RBP-3.92□□□□□ -3.04
snR40snR40 TSR2Q06672 205 aaKnown RBP-3.92□□□□□ -3.04
snR40snR40 CCW14O13547 238 aa-3.93□□□□□ -3.04
snR40snR40 TRX2P22803 104 aaKnown RBP-3.93□□□□□ -3.04
snR40snR40 PTM1P32857 523 aa-3.93□□□□□ -3.04
snR40snR40 UTP30P36144 274 aaKnown RBP-3.93□□□□□ -3.04
snR40snR40 HSM3P38348 480 aa-3.93□□□□□ -3.04
snR40snR40 RHO3Q00245 231 aaKnown RBP-3.93□□□□□ -3.04
snR40snR40 PAR32Q12515 295 aaKnown RBP-3.93□□□□□ -3.04
snR40snR40 YBR072C-AQ3E794 53 aa-3.93□□□□□ -3.04
snR40snR40 RPL33AP05744 107 aaKnown RBP-3.94□□□□□ -3.04
snR40snR40 APA2P22108 325 aa-3.94□□□□□ -3.04
snR40snR40 VPS3P23643 1011 aa-3.94□□□□□ -3.04
snR40snR40 YBR013CP38215 129 aa-3.94□□□□□ -3.04
snR40snR40 PDS1P40316 373 aaPredicted RBP-3.94□□□□□ -3.04
snR40snR40 PDR16P53860 351 aaKnown RBP-3.94□□□□□ -3.04
snR40snR40 PIR1Q03178 341 aa-3.94□□□□□ -3.04
snR40snR40 SHH3Q04487 196 aa-3.94□□□□□ -3.04
snR40snR40 RHO1P06780 209 aaKnown RBP-3.95□□□□□ -3.04
snR40snR40 BET1P22804 142 aa-3.95□□□□□ -3.04
snR40snR40 YBR016WP38216 128 aa-3.95□□□□□ -3.04
snR40snR40 MIC12P38341 106 aa-3.95□□□□□ -3.04
snR40snR40 YMR144WP40214 342 aaKnown RBP-3.95□□□□□ -3.04
snR40snR40 GLC8P41818 229 aa-3.95□□□□□ -3.04
snR40snR40 YML108WQ03759 105 aa-3.95□□□□□ -3.04
snR40snR40 YDR249CQ03787 373 aa-3.95□□□□□ -3.04
snR40snR40 RIM9Q04734 239 aa-3.95□□□□□ -3.04
snR40snR40 TDA8Q6B2U8 126 aa-3.95□□□□□ -3.04
snR40snR40 SNF4P12904 322 aa-3.96□□□□□ -3.04
snR40snR40 SRB4P32569 687 aa-3.96□□□□□ -3.04
snR40snR40 RPS29AP41057 56 aaKnown RBP-3.96□□□□□ -3.04
snR40snR40 YJR149WP47177 404 aa-3.96□□□□□ -3.04
snR40snR40 LSO2Q3E772 92 aaKnown RBP-3.96□□□□□ -3.04
snR40snR40 MBF1O14467 151 aaKnown RBP-3.97□□□□□ -3.04
snR40snR40 HYP2P23301 157 aaKnown RBP-3.97□□□□□ -3.04
snR40snR40 YJR012CP47087 207 aa-3.97□□□□□ -3.04
snR40snR40 MIC27P50945 234 aa-3.97□□□□□ -3.04
snR40snR40 YOR385WQ08909 290 aa-3.97□□□□□ -3.04
snR40snR40 CAR2P07991 424 aaKnown RBP-3.98□□□□□ -3.05
snR40snR40 RPB3P16370 318 aaKnown RBP-3.98□□□□□ -3.05
snR40snR40 YRA2P36036 203 aaKnown RBP RIP-Chip data-3.98□□□□□ -3.05not detected
snR40snR40 YBR096WP38256 230 aa-3.98□□□□□ -3.05
snR40snR40 LIN1P38852 340 aaPredicted RBP-3.98□□□□□ -3.05
snR40snR40 GEP7P53171 287 aa-3.98□□□□□ -3.05
snR40snR40 DML1Q03652 475 aa-3.98□□□□□ -3.05
snR40snR40 YPR098CQ06089 161 aa-3.98□□□□□ -3.05
snR40snR40 ATG41Q12048 136 aa-3.98□□□□□ -3.05
snR40snR40 NBL1Q3E7Y6 73 aa-3.98□□□□□ -3.05
snR40snR40 COQ1P18900 473 aa-3.99□□□□□ -3.05
snR40snR40 DPB3P27344 201 aa-3.99□□□□□ -3.05
snR40snR40 MRPL31P14063 131 aaPredicted RBP-4□□□□□ -3.05
snR40snR40 TPM2P40414 161 aa-4□□□□□ -3.05
snR40snR40 DIE2P50076 525 aa-4□□□□□ -3.05
snR40snR40 KAP95Q06142 861 aaKnown RBP-4□□□□□ -3.05
snR40snR40 SAC3P46674 1301 aa-4□□□□□ -3.05
snR40snR40 MRPL50P53724 139 aa-4.01□□□□□ -3.05
snR40snR40 IDP1P21954 428 aaKnown RBP-4.02□□□□□ -3.05
Retrieved 100 of 5,963 RNA–protein pairs in 54.8 ms