RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeast

Gene VAM3, Length 852 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAM3	YOR106W	COA3	Q3E7B2	85 aa		1.04	□□□□□ -2.24
VAM3	YOR106W	YPK2	P18961	677 aa		1.03	□□□□□ -2.24
VAM3	YOR106W	YER134C	P40081	178 aa		1.03	□□□□□ -2.24
VAM3	YOR106W	MSS2	P40990	351 aa		1.03	□□□□□ -2.24
VAM3	YOR106W	UBC12	P52491	188 aa		1.03	□□□□□ -2.24
VAM3	YOR106W	IKI1	P38874	309 aa		1.02	□□□□□ -2.25
VAM3	YOR106W	YMR099C	Q03161	297 aa	Known RBP	1.02	□□□□□ -2.25
VAM3	YOR106W	YPR013C	Q12145	317 aa		1.02	□□□□□ -2.25
VAM3	YOR106W	SER2	P42941	309 aa		1.01	□□□□□ -2.25
VAM3	YOR106W	RNH202	Q05635	350 aa		1.01	□□□□□ -2.25
VAM3	YOR106W	GGA1	Q06336	557 aa		1.01	□□□□□ -2.25
VAM3	YOR106W	YAR023C	D6VPM8	179 aa		1	□□□□□ -2.25
VAM3	YOR106W	ARO7	P32178	256 aa		1	□□□□□ -2.25
VAM3	YOR106W	YMR226C	Q05016	267 aa	Known RBP	1	□□□□□ -2.25
VAM3	YOR106W	PHO85	P17157	305 aa		0.99	□□□□□ -2.25
VAM3	YOR106W	CNB1	P25296	175 aa		0.99	□□□□□ -2.25
VAM3	YOR106W	TAF14	P35189	244 aa		0.99	□□□□□ -2.25
VAM3	YOR106W	SFK1	P35735	353 aa		0.99	□□□□□ -2.25
VAM3	YOR106W	SKI6	P46948	246 aa	Predicted RBP	0.99	□□□□□ -2.25
VAM3	YOR106W	ALB1	P47019	175 aa	Predicted RBP	0.99	□□□□□ -2.25
VAM3	YOR106W	THG1	P53215	237 aa	Known RBP	0.99	□□□□□ -2.25
VAM3	YOR106W	DIG2	Q03373	323 aa	Known RBP	0.99	□□□□□ -2.25
VAM3	YOR106W	SHH3	Q04487	196 aa		0.99	□□□□□ -2.25
VAM3	YOR106W	MBF1	O14467	151 aa	Known RBP	0.98	□□□□□ -2.25
VAM3	YOR106W	MTW1	P39731	289 aa		0.98	□□□□□ -2.25
VAM3	YOR106W	YDR391C	Q04170	232 aa		0.98	□□□□□ -2.25
VAM3	YOR106W	MRPL15	P36523	253 aa		0.97	□□□□□ -2.25
VAM3	YOR106W	BNA7	Q04066	261 aa		0.97	□□□□□ -2.25
VAM3	YOR106W	GSP2	P32836	220 aa	Known RBP	0.96	□□□□□ -2.26
VAM3	YOR106W	PAM17	P36147	197 aa		0.96	□□□□□ -2.26
VAM3	YOR106W	GCN20	P43535	752 aa	Known RBP	0.96	□□□□□ -2.26
VAM3	YOR106W	YOL014W	Q08110	124 aa		0.96	□□□□□ -2.26
VAM3	YOR106W	RFA3	P26755	122 aa	Known RBP	0.95	□□□□□ -2.26
VAM3	YOR106W	ARP3	P47117	449 aa	Known RBP	0.95	□□□□□ -2.26
VAM3	YOR106W	MET31	Q03081	177 aa		0.95	□□□□□ -2.26
VAM3	YOR106W	RFC4	P40339	323 aa	Known RBP	0.94	□□□□□ -2.26
VAM3	YOR106W	CUP9	P41817	306 aa		0.94	□□□□□ -2.26
VAM3	YOR106W	YNL033W	P53964	284 aa		0.94	□□□□□ -2.26
VAM3	YOR106W	YLR036C	Q07986	203 aa		0.94	□□□□□ -2.26
VAM3	YOR106W	RUD3	Q12234	484 aa	Known RBP	0.94	□□□□□ -2.26
VAM3	YOR106W	YML100W-A	Q8TGT0	57 aa		0.94	□□□□□ -2.26
VAM3	YOR106W	HTB1	P02293	131 aa	Known RBP	0.93	□□□□□ -2.26
VAM3	YOR106W	HTB2	P02294	131 aa		0.93	□□□□□ -2.26
VAM3	YOR106W	MGT1	P26188	188 aa		0.93	□□□□□ -2.26
VAM3	YOR106W	UBC8	P28263	218 aa		0.93	□□□□□ -2.26
VAM3	YOR106W	ASF2	P32448	525 aa	Predicted RBP	0.93	□□□□□ -2.26
VAM3	YOR106W	UGX2	P32772	223 aa		0.93	□□□□□ -2.26
VAM3	YOR106W	NOP19	P53317	196 aa	Predicted RBP	0.93	□□□□□ -2.26
VAM3	YOR106W	AHT1	P29589	182 aa		0.92	□□□□□ -2.26
VAM3	YOR106W	PGA2	P53903	129 aa		0.92	□□□□□ -2.26
VAM3	YOR106W	FAS1	P07149	2051 aa	Known RBP	0.92	□□□□□ -2.26
VAM3	YOR106W	ARG80	P07249	177 aa		0.91	□□□□□ -2.26
VAM3	YOR106W	MRS1	P07266	363 aa		0.91	□□□□□ -2.26
VAM3	YOR106W	YMR253C	Q04835	414 aa		0.91	□□□□□ -2.26
VAM3	YOR106W	YLR031W	Q07978	186 aa		0.91	□□□□□ -2.26
VAM3	YOR106W	YPR203W	Q08994	102 aa		0.91	□□□□□ -2.26
VAM3	YOR106W	TIR1	P10863	254 aa		0.9	□□□□□ -2.27
VAM3	YOR106W	SNF4	P12904	322 aa		0.9	□□□□□ -2.27
VAM3	YOR106W	YBR242W	P38331	238 aa		0.9	□□□□□ -2.27
VAM3	YOR106W	GIS3	Q12418	502 aa		0.89	□□□□□ -2.27
VAM3	YOR106W	SEN2	P16658	377 aa		0.88	□□□□□ -2.27
VAM3	YOR106W	YJR111C	P47148	283 aa	Known RBP	0.88	□□□□□ -2.27
VAM3	YOR106W	MMS2	P53152	137 aa		0.88	□□□□□ -2.27
VAM3	YOR106W	ABP140	Q08641	628 aa	Known RBP	0.88	□□□□□ -2.27
VAM3	YOR106W	GET4	Q12125	312 aa		0.88	□□□□□ -2.27
VAM3	YOR106W	ADF1	Q2V2Q1	113 aa		0.88	□□□□□ -2.27
VAM3	YOR106W	FMP49	A0A023PZB3	126 aa		0.87	□□□□□ -2.27
VAM3	YOR106W	IDP1	P21954	428 aa	Known RBP	0.87	□□□□□ -2.27
VAM3	YOR106W	YCR023C	P25351	611 aa		0.87	□□□□□ -2.27
VAM3	YOR106W	YHL037C	P38733	133 aa		0.87	□□□□□ -2.27
VAM3	YOR106W	YFL051C	P43552	160 aa		0.87	□□□□□ -2.27
VAM3	YOR106W	RRP17	Q04031	235 aa	Predicted RBP	0.87	□□□□□ -2.27
VAM3	YOR106W	NAT3	Q06504	195 aa		0.87	□□□□□ -2.27
VAM3	YOR106W	SPC25	P40014	221 aa		0.86	□□□□□ -2.27
VAM3	YOR106W	YIL102C	P40488	101 aa		0.86	□□□□□ -2.27
VAM3	YOR106W	TDA4	P47153	279 aa		0.86	□□□□□ -2.27
VAM3	YOR106W	VPS71	Q03433	280 aa		0.86	□□□□□ -2.27
VAM3	YOR106W	FYV12	Q08559	129 aa		0.86	□□□□□ -2.27
VAM3	YOR106W	STF2	P16965	84 aa		0.85	□□□□□ -2.27
VAM3	YOR106W	MAK5	P38112	773 aa	Predicted RBP	0.85	□□□□□ -2.27
VAM3	YOR106W	TMA22	P47089	198 aa	Predicted RBP	0.85	□□□□□ -2.27
VAM3	YOR106W	SBH2	P52871	88 aa		0.85	□□□□□ -2.27
VAM3	YOR106W	TAR1	Q8TGM6	124 aa		0.85	□□□□□ -2.27
VAM3	YOR106W	PDS1	P40316	373 aa	Predicted RBP	0.84	□□□□□ -2.27
VAM3	YOR106W	FIT1	Q04433	528 aa		0.84	□□□□□ -2.27
VAM3	YOR106W	YMR315W	Q04869	349 aa	Known RBP	0.84	□□□□□ -2.27
VAM3	YOR106W	IGO2	Q9P305	131 aa		0.84	□□□□□ -2.27
VAM3	YOR106W	CBF1	P17106	351 aa		0.83	□□□□□ -2.28
VAM3	YOR106W	YNL184C	P53876	108 aa		0.83	□□□□□ -2.28
VAM3	YOR106W	PIR1	Q03178	341 aa		0.83	□□□□□ -2.28
VAM3	YOR106W	PST2	Q12335	198 aa	Known RBP	0.83	□□□□□ -2.28
VAM3	YOR106W	RPS24A	P0CX31	135 aa	Known RBP	0.82	□□□□□ -2.28
VAM3	YOR106W	RPS24B	P0CX32	135 aa	Known RBP	0.82	□□□□□ -2.28
VAM3	YOR106W	YAR064W	P39563	99 aa		0.82	□□□□□ -2.28
VAM3	YOR106W	YFL019C	P43576	117 aa		0.82	□□□□□ -2.28
VAM3	YOR106W	MRPS17	Q03246	237 aa	Predicted RBP	0.82	□□□□□ -2.28
VAM3	YOR106W	YOR015W	Q12169	119 aa		0.82	□□□□□ -2.28
VAM3	YOR106W	YGL235W	P53071	178 aa		0.81	□□□□□ -2.28
VAM3	YOR106W	CCW12	Q12127	133 aa		0.81	□□□□□ -2.28
VAM3	YOR106W	GPI14	P47088	403 aa	Known RBP	0.8	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 57.5 ms