RNA–Protein interactions for RNA: YMR012W

CLU1, Transcript of Subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene CLU1, Length 3,834 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLU1	YMR012W	RPL35A	P0CX84	120 aa	Known RBP	0.86	□□□□□ -2.27
CLU1	YMR012W	RPL35B	P0CX85	120 aa	Known RBP	0.86	□□□□□ -2.27
CLU1	YMR012W	TOA2	P32774	122 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	IDP3	P53982	420 aa	Known RBP	0.86	□□□□□ -2.27
CLU1	YMR012W	SEI1	Q06058	285 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	ATG17	Q06410	417 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	SGT1	Q08446	395 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	DCN1	Q12395	269 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	YCL021W-A	Q96VH3	125 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	YPL229W	Q99395	206 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.86	□□□□□ -2.27	not detected
CLU1	YMR012W	BUD13	P46947	266 aa	Predicted RBP	0.86	□□□□□ -2.27
CLU1	YMR012W	COS2	P0CX12	379 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	COS3	P0CX13	379 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	STP22	P25604	385 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	YBR285W	P38354	144 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	YAR068W	P39564	161 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	COS4	P43542	379 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	FMP32	P43557	207 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	BNS1	P50084	137 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	YGR017W	P53210	297 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	YNR062C	P53748	327 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	CWC25	P53854	179 aa	Known RBP	0.86	□□□□□ -2.27
CLU1	YMR012W	SRL4	Q03085	281 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	ADD37	Q03233	198 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	TAF9	Q05027	157 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	PBA1	Q05778	276 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	YPR195C	Q06594	109 aa		0.86	□□□□□ -2.27
CLU1	YMR012W	MSI1	P13712	422 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	YKL075C	P36083	450 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	YBR220C	P38318	560 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	YDC1	Q02896	317 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	YAL063C-A	Q3E791	96 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	MHF1	Q3E835	90 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	DOG2	P38773	246 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	DOG1	P38774	246 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	EDC2	P40023	145 aa	Predicted RBP	0.85	□□□□□ -2.27
CLU1	YMR012W	YJL218W	P40892	196 aa	Known RBP	0.85	□□□□□ -2.27
CLU1	YMR012W	SNX4	P47057	423 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	UFD1	P53044	361 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	YGR042W	P53227	271 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	SLH1	P53327	1967 aa	Known RBP	0.85	□□□□□ -2.27
CLU1	YMR012W	YMD8	Q03697	442 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	YMR254C	Q04838	102 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	SSO1	P32867	290 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	GON7	P46984	123 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	YGL262W	P53054	175 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	ARO8	P53090	500 aa	Known RBP	0.85	□□□□□ -2.27
CLU1	YMR012W	EAF7	P53911	425 aa	Known RBP	0.85	□□□□□ -2.27
CLU1	YMR012W	RMI1	Q02685	241 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	YDR249C	Q03787	373 aa		0.85	□□□□□ -2.27
CLU1	YMR012W	PRP11	Q07350	266 aa	Predicted RBP	0.85	□□□□□ -2.27
CLU1	YMR012W	TMC1	Q08422	150 aa	Predicted RBP	0.85	□□□□□ -2.27
CLU1	YMR012W	TIR4	Q12218	487 aa	Predicted RBP	0.85	□□□□□ -2.27
CLU1	YMR012W	NOT5	Q12514	560 aa	Predicted RBP	0.85	□□□□□ -2.27
CLU1	YMR012W	CDC8	P00572	216 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	RPL25	P04456	142 aa	Known RBP	0.84	□□□□□ -2.27
CLU1	YMR012W	CBS2	P14905	389 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	YCR087C-A	P37263	153 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	GPI18	P38211	433 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	YEL073C	P39974	107 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	RSM27	P53305	110 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	YHR214C-D	P0CX93	97 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	MGT1	P26188	188 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	TRR1	P29509	319 aa	Known RBP	0.84	□□□□□ -2.27
CLU1	YMR012W	ETR1	P38071	380 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	SRL1	Q08673	210 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	AGC1	Q12482	902 aa		0.84	□□□□□ -2.27
CLU1	YMR012W	IRA1	P18963	3092 aa		0.84	□□□□□ -2.28
CLU1	YMR012W	QCR6	P00127	147 aa		0.84	□□□□□ -2.28
CLU1	YMR012W	TPI1	P00942	248 aa	Known RBP	0.84	□□□□□ -2.28
CLU1	YMR012W	ACB1	P31787	87 aa		0.84	□□□□□ -2.28
CLU1	YMR012W	YKR070W	P36151	352 aa	Known RBP	0.84	□□□□□ -2.28
CLU1	YMR012W	EDC3	P39998	551 aa	Known RBP	0.84	□□□□□ -2.28
CLU1	YMR012W	PRM8	P53174	237 aa		0.84	□□□□□ -2.28
CLU1	YMR012W	PDR17	P53844	350 aa		0.84	□□□□□ -2.28
CLU1	YMR012W	ACT1	P60010	375 aa	Known RBP	0.84	□□□□□ -2.28
CLU1	YMR012W	YML018C	Q03730	393 aa		0.84	□□□□□ -2.28
CLU1	YMR012W	UPS1	Q05776	175 aa		0.84	□□□□□ -2.28
CLU1	YMR012W	SHH4	Q06236	168 aa		0.84	□□□□□ -2.28
CLU1	YMR012W	RIO1	Q12196	484 aa	Known RBP	0.84	□□□□□ -2.28
CLU1	YMR012W	JIP3	O13555	125 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	CDC7	P06243	507 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	DEP1	P31385	405 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	RCN1	P36054	211 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	VMA22	P38784	181 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	YND1	P40009	630 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	ATG18	P43601	500 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	MRPS16	Q02608	121 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	NNT1	Q05874	261 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	MBF1	O14467	151 aa	Known RBP	0.83	□□□□□ -2.28
CLU1	YMR012W	MSW1	P04803	379 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	RPS23A	P0CX29	145 aa	Known RBP	0.83	□□□□□ -2.28
CLU1	YMR012W	RPS23B	P0CX30	145 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	IFM1	P25038	676 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	YCR007C	P25354	239 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	YBL059W	P34224	193 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	CLG1	P35190	452 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	POP7	P38291	140 aa		0.83	□□□□□ -2.28
CLU1	YMR012W	RPS29B	P41058	56 aa	Known RBP	0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 51.6 ms