RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W PGA1P53896 198 aa2□□□□□ -2.09
UPF3YGR072W HPT1Q04178 221 aaKnown RBP2□□□□□ -2.09
UPF3YGR072W PEX11Q12462 236 aa2□□□□□ -2.09
UPF3YGR072W YML100W-AQ8TGT0 57 aa2□□□□□ -2.09
UPF3YGR072W ATG40Q99325 256 aa2□□□□□ -2.09
UPF3YGR072W MET5P47169 1442 aa2□□□□□ -2.09
UPF3YGR072W RAD51P25454 400 aa1.99□□□□□ -2.09
UPF3YGR072W YKR041WP36134 250 aa1.99□□□□□ -2.09
UPF3YGR072W MAK5P38112 773 aaPredicted RBP1.99□□□□□ -2.09
UPF3YGR072W NVJ1P38881 321 aa1.99□□□□□ -2.09
UPF3YGR072W YNL140CP53910 189 aa1.99□□□□□ -2.09
UPF3YGR072W BUD25P85052 153 aa1.99□□□□□ -2.09
UPF3YGR072W YMR295CQ03559 197 aa1.99□□□□□ -2.09
UPF3YGR072W YOL014WQ08110 124 aa1.99□□□□□ -2.09
UPF3YGR072W BRX1Q08235 291 aaKnown RBP1.99□□□□□ -2.09
UPF3YGR072W YOR342CQ12182 319 aa1.99□□□□□ -2.09
UPF3YGR072W QCR6P00127 147 aa1.98□□□□□ -2.09
UPF3YGR072W QCR2P07257 368 aa1.98□□□□□ -2.09
UPF3YGR072W DDI2P0CH63 225 aa1.98□□□□□ -2.09
UPF3YGR072W DDI3P0CH64 225 aa1.98□□□□□ -2.09
UPF3YGR072W TFC1P32367 649 aa1.98□□□□□ -2.09
UPF3YGR072W FZF1P32805 299 aa1.98□□□□□ -2.09
UPF3YGR072W ARC19P33204 171 aaKnown RBP1.98□□□□□ -2.09
UPF3YGR072W CLG1P35190 452 aa1.98□□□□□ -2.09
UPF3YGR072W TVP38P36164 337 aa1.98□□□□□ -2.09
UPF3YGR072W FES1P38260 290 aa1.98□□□□□ -2.09
UPF3YGR072W MTW1P39731 289 aa1.98□□□□□ -2.09
UPF3YGR072W YER076CP40049 302 aa1.98□□□□□ -2.09
UPF3YGR072W PEP8P40335 379 aa1.98□□□□□ -2.09
UPF3YGR072W YJL027CP47063 138 aaPredicted RBP1.98□□□□□ -2.09
UPF3YGR072W YNR077CP53758 84 aa1.98□□□□□ -2.09
UPF3YGR072W GPI17Q04080 534 aa1.98□□□□□ -2.09
UPF3YGR072W YAR023CD6VPM8 179 aa1.97□□□□□ -2.09
UPF3YGR072W POR1P04840 283 aaKnown RBP1.97□□□□□ -2.09
UPF3YGR072W CMD1P06787 147 aaKnown RBP1.97□□□□□ -2.09
UPF3YGR072W YKL102CP34249 101 aa1.97□□□□□ -2.09
UPF3YGR072W NSG1P38837 291 aa1.97□□□□□ -2.09
UPF3YGR072W TVP23P38962 199 aa1.97□□□□□ -2.09
UPF3YGR072W FCY21P40039 528 aa1.97□□□□□ -2.09
UPF3YGR072W AYR1P40471 297 aa1.97□□□□□ -2.09
UPF3YGR072W YMR099CQ03161 297 aaKnown RBP1.97□□□□□ -2.09
UPF3YGR072W CUE4Q04201 117 aaPredicted RBP1.97□□□□□ -2.09
UPF3YGR072W SML1Q04964 104 aa1.97□□□□□ -2.09
UPF3YGR072W YLR412C-AQ3E742 68 aa1.97□□□□□ -2.09
UPF3YGR072W RAS2P01120 322 aaKnown RBP1.96□□□□□ -2.1
UPF3YGR072W ARO7P32178 256 aa1.96□□□□□ -2.1
UPF3YGR072W FMP23P38231 175 aa1.96□□□□□ -2.1
UPF3YGR072W GAA1P39012 614 aa1.96□□□□□ -2.1
UPF3YGR072W VPS71Q03433 280 aa1.96□□□□□ -2.1
UPF3YGR072W SHH3Q04487 196 aa1.96□□□□□ -2.1
UPF3YGR072W YHR086W-AQ3E746 53 aa1.96□□□□□ -2.1
UPF3YGR072W PDR18P53756 1333 aa1.95□□□□□ -2.1
UPF3YGR072W YLR236CA0A023PZG4 107 aa1.95□□□□□ -2.1
UPF3YGR072W RME1P32338 300 aaKnown RBP1.95□□□□□ -2.1
UPF3YGR072W GPI14P47088 403 aaKnown RBP1.95□□□□□ -2.1
UPF3YGR072W MAK3Q03503 176 aa1.95□□□□□ -2.1
UPF3YGR072W NSP1P14907 823 aaKnown RBP1.94□□□□□ -2.1
UPF3YGR072W YER121WP40076 114 aa1.94□□□□□ -2.1
UPF3YGR072W RFC2P40348 353 aa1.94□□□□□ -2.1
UPF3YGR072W CUP9P41817 306 aa1.94□□□□□ -2.1
UPF3YGR072W ERJ5P43613 295 aaPredicted RBP1.94□□□□□ -2.1
UPF3YGR072W XPT1P47165 209 aa1.94□□□□□ -2.1
UPF3YGR072W TMA20P89886 181 aaPredicted RBP1.94□□□□□ -2.1
UPF3YGR072W GRX5Q02784 150 aa1.94□□□□□ -2.1
UPF3YGR072W ANT1Q06497 328 aa1.94□□□□□ -2.1
UPF3YGR072W YLR053CQ12026 108 aa1.94□□□□□ -2.1
UPF3YGR072W SPO13P23624 291 aa1.93□□□□□ -2.1
UPF3YGR072W TMA19P35691 167 aaKnown RBP1.93□□□□□ -2.1
UPF3YGR072W AME1P38313 324 aa1.93□□□□□ -2.1
UPF3YGR072W YFL019CP43576 117 aa1.93□□□□□ -2.1
UPF3YGR072W EFM5P53200 248 aaKnown RBP1.93□□□□□ -2.1
UPF3YGR072W TIM13P53299 105 aa1.93□□□□□ -2.1
UPF3YGR072W MPA43P53583 542 aaPredicted RBP1.93□□□□□ -2.1
UPF3YGR072W NAT3Q06504 195 aa1.93□□□□□ -2.1
UPF3YGR072W RAD28Q12021 506 aa1.93□□□□□ -2.1
UPF3YGR072W NSA2P40078 261 aaKnown RBP1.92□□□□□ -2.1
UPF3YGR072W KNH1P50112 268 aa1.92□□□□□ -2.1
UPF3YGR072W MPC3P53311 146 aa1.92□□□□□ -2.1
UPF3YGR072W POP3P53833 195 aaPredicted RBP1.92□□□□□ -2.1
UPF3YGR072W YDR476CQ03362 224 aa1.92□□□□□ -2.1
UPF3YGR072W SMD2Q06217 110 aaKnown RBP1.92□□□□□ -2.1
UPF3YGR072W DGK1Q12382 290 aa1.92□□□□□ -2.1
UPF3YGR072W RPS28BP0C0X0 67 aaKnown RBP1.91□□□□□ -2.1
UPF3YGR072W TIR1P10863 254 aa1.91□□□□□ -2.1
UPF3YGR072W SEC11P15367 167 aa1.91□□□□□ -2.1
UPF3YGR072W YPR174CQ06616 221 aaPredicted RBP1.91□□□□□ -2.1
UPF3YGR072W IRC23Q08416 157 aa1.91□□□□□ -2.1
UPF3YGR072W YDL180WQ12301 547 aa1.91□□□□□ -2.1
UPF3YGR072W RPS28AQ3E7X9 67 aaPredicted RBP1.91□□□□□ -2.1
UPF3YGR072W FLO9P39712 1322 aa1.91□□□□□ -2.1
UPF3YGR072W SPC25P40014 221 aa1.9□□□□□ -2.11
UPF3YGR072W YFH7P43591 353 aa1.9□□□□□ -2.11
UPF3YGR072W YFR054CP43622 192 aa1.9□□□□□ -2.11
UPF3YGR072W TTI2P47168 421 aa1.9□□□□□ -2.11
UPF3YGR072W SBH1P52870 82 aa1.9□□□□□ -2.11
UPF3YGR072W YMR253CQ04835 414 aa1.9□□□□□ -2.11
UPF3YGR072W RDI1Q12434 202 aa1.9□□□□□ -2.11
UPF3YGR072W IDP1P21954 428 aaKnown RBP1.89□□□□□ -2.11
UPF3YGR072W NUF2P33895 451 aa1.89□□□□□ -2.11
UPF3YGR072W PAM17P36147 197 aa1.89□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 29.9 ms