RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	BOL1	Q3E793	110 aa		5.1	□□□□□ -1.59
RPT3	YDR394W	QCR9	P22289	66 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	YCR025C	P25352	136 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	LAC1	P28496	418 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	SHB17	P36136	271 aa	Known RBP	5.09	□□□□□ -1.59
RPT3	YDR394W	SDH4	P37298	181 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	RTC3	P38804	111 aa	Predicted RBP	5.09	□□□□□ -1.59
RPT3	YDR394W	WSS1	P38838	269 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	COX15	P40086	486 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	PCL7	P40186	285 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	PAU15	P40585	124 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	TTI2	P47168	421 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	DAN1	P47178	298 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	GEP7	P53171	287 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	YGR050C	P53231	118 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	PAU4	P53427	120 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	HSK3	P69852	69 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	YFH1	Q07540	174 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	SWT1	Q12104	458 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	ATG5	Q12380	294 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	CMC2	Q3E7A4	109 aa		5.09	□□□□□ -1.59
RPT3	YDR394W	VPS63	O13549	108 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	YMR31	P19955	123 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	LSB5	P25369	354 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	AHT1	P29589	182 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	CPR5	P35176	225 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	MRPS9	P38120	278 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	YHR138C	P38841	114 aa	Predicted RBP	5.08	□□□□□ -1.6
RPT3	YDR394W	NSE4	P43124	402 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	PUS4	P48567	403 aa	Known RBP	5.08	□□□□□ -1.6
RPT3	YDR394W	RIB4	P50861	169 aa	Predicted RBP	5.08	□□□□□ -1.6
RPT3	YDR394W	TEX1	P53851	422 aa	Known RBP	5.08	□□□□□ -1.6
RPT3	YDR394W	ACS1	Q01574	713 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	YPL077C	Q02831	240 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	DCS1	Q06151	350 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	YLR118C	Q12354	227 aa		5.08	□□□□□ -1.6
RPT3	YDR394W	PAU1	P0CE88	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	PAU14	P0CE89	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	PAU6	P0CE90	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	PAU18	P0CE91	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	PAU8	P0CE92	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	PAU11	P0CE93	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	RPB3	P16370	318 aa	Known RBP	5.07	□□□□□ -1.6
RPT3	YDR394W	ROX3	P25046	220 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	POP5	P28005	173 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	YPT31	P38555	223 aa	Known RBP	5.07	□□□□□ -1.6
RPT3	YDR394W	PAU13	P38725	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	FLO5	P38894	1075 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	PSD1	P39006	500 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	SEN34	P39707	275 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	RMD6	P39975	231 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	PHB1	P40961	287 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	GON7	P46984	123 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	BNS1	P50084	137 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	UBC13	P52490	153 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	MGA1	P53050	456 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	PAU10	Q03050	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	ECM18	Q04623	453 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	CTR3	Q06686	241 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	PAU20	Q08322	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	YPS3	Q12303	508 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	SME1	Q12330	94 aa	Predicted RBP	5.07	□□□□□ -1.6
RPT3	YDR394W	FOL3	Q12676	427 aa	Predicted RBP	5.07	□□□□□ -1.6
RPT3	YDR394W	PAU9	Q3E770	120 aa		5.07	□□□□□ -1.6
RPT3	YDR394W	BLM10	P43583	2143 aa		5.06	□□□□□ -1.6
RPT3	YDR394W	RPS23A	P0CX29	145 aa	Known RBP	5.06	□□□□□ -1.6
RPT3	YDR394W	RPS23B	P0CX30	145 aa		5.06	□□□□□ -1.6
RPT3	YDR394W	SPO13	P23624	291 aa		5.06	□□□□□ -1.6
RPT3	YDR394W	DAL3	P32459	195 aa		5.06	□□□□□ -1.6
RPT3	YDR394W	NTF2	P33331	125 aa	Known RBP	5.06	□□□□□ -1.6
RPT3	YDR394W	RPL14A	P36105	138 aa	Known RBP	5.06	□□□□□ -1.6
RPT3	YDR394W	RPL14B	P38754	138 aa	Known RBP	5.06	□□□□□ -1.6
RPT3	YDR394W	YGR269W	P40326	108 aa		5.06	□□□□□ -1.6
RPT3	YDR394W	ARP3	P47117	449 aa	Known RBP	5.06	□□□□□ -1.6
RPT3	YDR394W	XPT1	P47165	209 aa		5.06	□□□□□ -1.6
RPT3	YDR394W	HCH1	P53834	153 aa		5.06	□□□□□ -1.6
RPT3	YDR394W	API2	Q04413	109 aa		5.06	□□□□□ -1.6
RPT3	YDR394W	YPL278C	Q08990	100 aa		5.06	□□□□□ -1.6
RPT3	YDR394W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	5.06	□□□□□ -1.6	not detected
RPT3	YDR394W	IRA1	P18963	3092 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	IRA2	P19158	3079 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	FCY2	P17064	533 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	POF1	P25576	258 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	CDC50	P25656	391 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	SPS18	P32572	300 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	SDH8	P38345	138 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	HSP10	P38910	106 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	ALG12	P53730	551 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	WSC2	P53832	503 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	LPP1	Q04396	274 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	RNH203	Q12338	110 aa		5.05	□□□□□ -1.6
RPT3	YDR394W	ACC1	Q00955	2233 aa	Known RBP	5.05	□□□□□ -1.6
RPT3	YDR394W	SEC16	P48415	2195 aa	Known RBP	5.04	□□□□□ -1.6
RPT3	YDR394W	YHL037C	P38733	133 aa		5.04	□□□□□ -1.6
RPT3	YDR394W	RTS2	P40962	232 aa		5.04	□□□□□ -1.6
RPT3	YDR394W	YAP1802	P53309	568 aa		5.04	□□□□□ -1.6
RPT3	YDR394W	CRR1	Q05790	422 aa		5.04	□□□□□ -1.6
RPT3	YDR394W	RFM1	Q12192	310 aa		5.04	□□□□□ -1.6
RPT3	YDR394W	YGL258W-A	Q3E740	77 aa		5.04	□□□□□ -1.6
RPT3	YDR394W	RPL9A	P05738	191 aa	Known RBP	5.03	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 48.8 ms