RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W YPR013CQ12145 317 aa0.09□□□□□ -2.39
PRP42YDR235W PRP8P33334 2413 aaKnown RBP0.09□□□□□ -2.39
PRP42YDR235W STE18P18852 110 aa0.09□□□□□ -2.4
PRP42YDR235W GSP2P32836 220 aaKnown RBP0.09□□□□□ -2.4
PRP42YDR235W PRP18P33411 251 aaPredicted RBP0.09□□□□□ -2.4
PRP42YDR235W PAM17P36147 197 aa0.09□□□□□ -2.4
PRP42YDR235W MRPL15P36523 253 aa0.09□□□□□ -2.4
PRP42YDR235W FMP23P38231 175 aa0.09□□□□□ -2.4
PRP42YDR235W YHL037CP38733 133 aa0.09□□□□□ -2.4
PRP42YDR235W YER134CP40081 178 aa0.09□□□□□ -2.4
PRP42YDR235W RTR1P40084 226 aaPredicted RBP0.09□□□□□ -2.4
PRP42YDR235W ERG10P41338 398 aaKnown RBP0.09□□□□□ -2.4
PRP42YDR235W YFL051CP43552 160 aa0.09□□□□□ -2.4
PRP42YDR235W RAD17P48581 401 aa0.09□□□□□ -2.4
PRP42YDR235W UBC12P52491 188 aa0.09□□□□□ -2.4
PRP42YDR235W THG1P53215 237 aaKnown RBP0.09□□□□□ -2.4
PRP42YDR235W BNA7Q04066 261 aa0.09□□□□□ -2.4
PRP42YDR235W YDR391CQ04170 232 aa0.09□□□□□ -2.4
PRP42YDR235W SHH3Q04487 196 aa0.09□□□□□ -2.4
PRP42YDR235W FUS2Q05670 677 aa0.09□□□□□ -2.4
PRP42YDR235W YPR203WQ08994 102 aa0.09□□□□□ -2.4
PRP42YDR235W PST2Q12335 198 aaKnown RBP0.09□□□□□ -2.4
PRP42YDR235W YAR023CD6VPM8 179 aa0.08□□□□□ -2.4
PRP42YDR235W CDC33P07260 213 aaKnown RBP0.08□□□□□ -2.4
PRP42YDR235W COQ1P18900 473 aa0.08□□□□□ -2.4
PRP42YDR235W YPK2P18961 677 aa0.08□□□□□ -2.4
PRP42YDR235W CNB1P25296 175 aa0.08□□□□□ -2.4
PRP42YDR235W UBC8P28263 218 aa0.08□□□□□ -2.4
PRP42YDR235W SFK1P35735 353 aa0.08□□□□□ -2.4
PRP42YDR235W YCR087C-AP37263 153 aa0.08□□□□□ -2.4
PRP42YDR235W YBR242WP38331 238 aa0.08□□□□□ -2.4
PRP42YDR235W RFC4P40339 323 aaKnown RBP0.08□□□□□ -2.4
PRP42YDR235W YIL102CP40488 101 aa0.08□□□□□ -2.4
PRP42YDR235W SER2P42941 309 aa0.08□□□□□ -2.4
PRP42YDR235W OTU1P43558 301 aa0.08□□□□□ -2.4
PRP42YDR235W ALB1P47019 175 aaPredicted RBP0.08□□□□□ -2.4
PRP42YDR235W ARP3P47117 449 aaKnown RBP0.08□□□□□ -2.4
PRP42YDR235W CWC23P52868 283 aaPredicted RBP0.08□□□□□ -2.4
PRP42YDR235W YNL033WP53964 284 aa0.08□□□□□ -2.4
PRP42YDR235W DYN3Q04949 312 aa0.08□□□□□ -2.4
PRP42YDR235W YOL014WQ08110 124 aa0.08□□□□□ -2.4
PRP42YDR235W YML100W-AQ8TGT0 57 aa0.08□□□□□ -2.4
PRP42YDR235W NCB2Q92317 146 aa0.08□□□□□ -2.4
PRP42YDR235W FAS1P07149 2051 aaKnown RBP0.08□□□□□ -2.4
PRP42YDR235W MBF1O14467 151 aaKnown RBP0.07□□□□□ -2.4
PRP42YDR235W ARG80P07249 177 aa0.07□□□□□ -2.4
PRP42YDR235W TIR1P10863 254 aa0.07□□□□□ -2.4
PRP42YDR235W MGT1P26188 188 aa0.07□□□□□ -2.4
PRP42YDR235W TAF14P35189 244 aa0.07□□□□□ -2.4
PRP42YDR235W YAR064WP39563 99 aa0.07□□□□□ -2.4
PRP42YDR235W MTW1P39731 289 aa0.07□□□□□ -2.4
PRP42YDR235W CUP9P41817 306 aa0.07□□□□□ -2.4
PRP42YDR235W VPS71Q03433 280 aa0.07□□□□□ -2.4
PRP42YDR235W FIT1Q04433 528 aa0.07□□□□□ -2.4
PRP42YDR235W YMR253CQ04835 414 aa0.07□□□□□ -2.4
PRP42YDR235W YLR036CQ07986 203 aa0.07□□□□□ -2.4
PRP42YDR235W FYV12Q08559 129 aa0.07□□□□□ -2.4
PRP42YDR235W ADF1Q2V2Q1 113 aa0.07□□□□□ -2.4
PRP42YDR235W YCL012CQ8J0M4 134 aa0.07□□□□□ -2.4
PRP42YDR235W TAR1Q8TGM6 124 aa0.07□□□□□ -2.4
PRP42YDR235W DUR1,2P32528 1835 aaKnown RBP0.07□□□□□ -2.4
PRP42YDR235W SNF4P12904 322 aa0.06□□□□□ -2.4
PRP42YDR235W STF2P16965 84 aa0.06□□□□□ -2.4
PRP42YDR235W IDP1P21954 428 aaKnown RBP0.06□□□□□ -2.4
PRP42YDR235W YCR023CP25351 611 aa0.06□□□□□ -2.4
PRP42YDR235W MAK5P38112 773 aaPredicted RBP0.06□□□□□ -2.4
PRP42YDR235W IKI1P38874 309 aa0.06□□□□□ -2.4
PRP42YDR235W SPC25P40014 221 aa0.06□□□□□ -2.4
PRP42YDR235W MSS2P40990 351 aa0.06□□□□□ -2.4
PRP42YDR235W DCV1P43595 202 aa0.06□□□□□ -2.4
PRP42YDR235W SKI6P46948 246 aaPredicted RBP0.06□□□□□ -2.4
PRP42YDR235W SBH2P52871 88 aa0.06□□□□□ -2.4
PRP42YDR235W YGL235WP53071 178 aa0.06□□□□□ -2.4
PRP42YDR235W PIR1Q03178 341 aa0.06□□□□□ -2.4
PRP42YDR235W RRP17Q04031 235 aaPredicted RBP0.06□□□□□ -2.4
PRP42YDR235W NAT3Q06504 195 aa0.06□□□□□ -2.4
PRP42YDR235W ABP140Q08641 628 aaKnown RBP0.06□□□□□ -2.4
PRP42YDR235W GET4Q12125 312 aa0.06□□□□□ -2.4
PRP42YDR235W CCW12Q12127 133 aa0.06□□□□□ -2.4
PRP42YDR235W HTB1P02293 131 aaKnown RBP0.05□□□□□ -2.4
PRP42YDR235W HTB2P02294 131 aa0.05□□□□□ -2.4
PRP42YDR235W MRS1P07266 363 aa0.05□□□□□ -2.4
PRP42YDR235W RFA3P26755 122 aaKnown RBP0.05□□□□□ -2.4
PRP42YDR235W ASF2P32448 525 aaPredicted RBP0.05□□□□□ -2.4
PRP42YDR235W PDS1P40316 373 aaPredicted RBP0.05□□□□□ -2.4
PRP42YDR235W MPM1P40364 252 aa0.05□□□□□ -2.4
PRP42YDR235W GCN20P43535 752 aaKnown RBP0.05□□□□□ -2.4
PRP42YDR235W YJR111CP47148 283 aaKnown RBP0.05□□□□□ -2.4
PRP42YDR235W NOP19P53317 196 aaPredicted RBP0.05□□□□□ -2.4
PRP42YDR235W SED1Q01589 338 aa0.05□□□□□ -2.4
PRP42YDR235W YLR031WQ07978 186 aa0.05□□□□□ -2.4
PRP42YDR235W YLR422WQ06409 1932 aa0.05□□□□□ -2.4
PRP42YDR235W YBL010CP32788 280 aa0.05□□□□□ -2.4
PRP42YDR235W ETR1P38071 380 aa0.05□□□□□ -2.4
PRP42YDR235W YFL019CP43576 117 aa0.05□□□□□ -2.4
PRP42YDR235W GPI14P47088 403 aaKnown RBP0.05□□□□□ -2.4
PRP42YDR235W YJR015WP47090 510 aa0.05□□□□□ -2.4
PRP42YDR235W SBH1P52870 82 aa0.05□□□□□ -2.4
PRP42YDR235W MMS2P53152 137 aa0.05□□□□□ -2.4
PRP42YDR235W YOR015WQ12169 119 aa0.05□□□□□ -2.4
Retrieved 100 of 5,963 RNA–protein pairs in 39.1 ms