RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C OST2P46964 130 aa0.94□□□□□ -2.26
VPS54YDR027C YJR146WP47174 117 aa0.94□□□□□ -2.26
VPS54YDR027C CCC1P47818 322 aa0.94□□□□□ -2.26
VPS54YDR027C RTC4P53850 401 aa0.94□□□□□ -2.26
VPS54YDR027C YDR476CQ03362 224 aa0.94□□□□□ -2.26
VPS54YDR027C PEX12Q04370 399 aa0.94□□□□□ -2.26
VPS54YDR027C ARR2Q06597 130 aa0.94□□□□□ -2.26
VPS54YDR027C RDS3Q06835 107 aaPredicted RBP0.94□□□□□ -2.26
VPS54YDR027C YLR031WQ07978 186 aa0.94□□□□□ -2.26
VPS54YDR027C ABP140Q08641 628 aaKnown RBP0.94□□□□□ -2.26
VPS54YDR027C LSO2Q3E772 92 aaKnown RBP0.94□□□□□ -2.26
VPS54YDR027C DPM1P14020 267 aaKnown RBP0.94□□□□□ -2.26
VPS54YDR027C FBA1P14540 359 aaKnown RBP0.94□□□□□ -2.26
VPS54YDR027C FCY2P17064 533 aa0.94□□□□□ -2.26
VPS54YDR027C APS1P35181 156 aa0.94□□□□□ -2.26
VPS54YDR027C YKR032WP36127 104 aa0.94□□□□□ -2.26
VPS54YDR027C RPF1P38805 295 aaKnown RBP0.94□□□□□ -2.26
VPS54YDR027C YHR125WP38831 101 aa0.94□□□□□ -2.26
VPS54YDR027C CTR2P38865 189 aa0.94□□□□□ -2.26
VPS54YDR027C YJL144WP47009 104 aa0.94□□□□□ -2.26
VPS54YDR027C MIX17Q03667 156 aa0.94□□□□□ -2.26
VPS54YDR027C YDR248CQ03786 193 aa0.94□□□□□ -2.26
VPS54YDR027C GRH1Q04410 372 aaKnown RBP0.94□□□□□ -2.26
VPS54YDR027C SAS5Q99314 248 aa0.94□□□□□ -2.26
VPS54YDR027C QCR7P00128 127 aa0.93□□□□□ -2.26
VPS54YDR027C CDC8P00572 216 aa0.93□□□□□ -2.26
VPS54YDR027C RPS28BP0C0X0 67 aaKnown RBP0.93□□□□□ -2.26
VPS54YDR027C YPR170W-BP0C5R9 85 aa0.93□□□□□ -2.26
VPS54YDR027C NHP6AP11632 93 aaKnown RBP0.93□□□□□ -2.26
VPS54YDR027C ADE1P27616 306 aa0.93□□□□□ -2.26
VPS54YDR027C ASF2P32448 525 aaPredicted RBP0.93□□□□□ -2.26
VPS54YDR027C SRP102P36057 244 aaPredicted RBP0.93□□□□□ -2.26
VPS54YDR027C ECM33P38248 429 aaKnown RBP0.93□□□□□ -2.26
VPS54YDR027C COS8P38723 381 aa0.93□□□□□ -2.26
VPS54YDR027C SRP14P38985 146 aa0.93□□□□□ -2.26
VPS54YDR027C YAR068WP39564 161 aa0.93□□□□□ -2.26
VPS54YDR027C BMT5P40493 336 aa0.93□□□□□ -2.26
VPS54YDR027C FIS1P40515 155 aa0.93□□□□□ -2.26
VPS54YDR027C YIL001WP40560 513 aa0.93□□□□□ -2.26
VPS54YDR027C YJL016WP47072 561 aa0.93□□□□□ -2.26
VPS54YDR027C ILM1P47155 203 aa0.93□□□□□ -2.26
VPS54YDR027C YJR141WP47172 347 aaPredicted RBP0.93□□□□□ -2.26
VPS54YDR027C YGL204CP53089 101 aa0.93□□□□□ -2.26
VPS54YDR027C YGR042WP53227 271 aa0.93□□□□□ -2.26
VPS54YDR027C PET191Q02772 108 aa0.93□□□□□ -2.26
VPS54YDR027C MAK3Q03503 176 aa0.93□□□□□ -2.26
VPS54YDR027C ARO80Q04052 950 aa0.93□□□□□ -2.26
VPS54YDR027C FUS2Q05670 677 aa0.93□□□□□ -2.26
VPS54YDR027C HRT1Q08273 121 aa0.93□□□□□ -2.26
VPS54YDR027C YPL257WQ08974 193 aa0.93□□□□□ -2.26
VPS54YDR027C AKR2Q12013 749 aa0.93□□□□□ -2.26
VPS54YDR027C RPS28AQ3E7X9 67 aaPredicted RBP0.93□□□□□ -2.26
VPS54YDR027C Q0255P03881 472 aa0.93□□□□□ -2.26
VPS54YDR027C TCA17P32613 152 aa0.93□□□□□ -2.26
VPS54YDR027C UTP11P34247 250 aaPredicted RBP0.93□□□□□ -2.26
VPS54YDR027C MRPL15P36523 253 aa0.93□□□□□ -2.26
VPS54YDR027C YCR087C-AP37263 153 aa0.93□□□□□ -2.26
VPS54YDR027C GRE3P38715 327 aaKnown RBP RIP-Chip data0.93□□□□□ -2.26not detected
VPS54YDR027C ARC15P40518 154 aaRIP-Chip data0.93□□□□□ -2.26not detected
VPS54YDR027C YJR056CP47115 236 aa0.93□□□□□ -2.26
VPS54YDR027C SBH2P52871 88 aa0.93□□□□□ -2.26
VPS54YDR027C RMR1P53060 241 aa0.93□□□□□ -2.26
VPS54YDR027C GET1P53192 235 aa0.93□□□□□ -2.26
VPS54YDR027C PDR17P53844 350 aa0.93□□□□□ -2.26
VPS54YDR027C YOR020W-AQ3E824 90 aa0.93□□□□□ -2.26
VPS54YDR027C YHR214C-EQ8TGK0 99 aa0.93□□□□□ -2.26
VPS54YDR027C BPH1P25356 2167 aa0.93□□□□□ -2.26
VPS54YDR027C YPR096CO13587 100 aa0.92□□□□□ -2.26
VPS54YDR027C SEC4P07560 215 aaKnown RBP0.92□□□□□ -2.26
VPS54YDR027C SNF6P18888 332 aa0.92□□□□□ -2.26
VPS54YDR027C SCO1P23833 295 aa0.92□□□□□ -2.26
VPS54YDR027C IRC22P40006 225 aa0.92□□□□□ -2.26
VPS54YDR027C COG3P40094 801 aa0.92□□□□□ -2.26
VPS54YDR027C FAR7P43592 221 aa0.92□□□□□ -2.26
VPS54YDR027C TRM12Q04235 462 aa0.92□□□□□ -2.26
VPS54YDR027C ATG39Q06159 398 aa0.92□□□□□ -2.26
VPS54YDR027C RPL26AP05743 127 aaKnown RBP0.92□□□□□ -2.26
VPS54YDR027C GCN3P14741 305 aa0.92□□□□□ -2.26
VPS54YDR027C PTM1P32857 523 aa0.92□□□□□ -2.26
VPS54YDR027C YBR063CP38083 404 aa0.92□□□□□ -2.26
VPS54YDR027C MAK5P38112 773 aaPredicted RBP0.92□□□□□ -2.26
VPS54YDR027C DOG2P38773 246 aa0.92□□□□□ -2.26
VPS54YDR027C DOG1P38774 246 aa0.92□□□□□ -2.26
VPS54YDR027C EGD2P38879 174 aaKnown RBP0.92□□□□□ -2.26
VPS54YDR027C DSK2P48510 373 aa0.92□□□□□ -2.26
VPS54YDR027C PRM8P53174 237 aa0.92□□□□□ -2.26
VPS54YDR027C RPL26BP53221 127 aaKnown RBP0.92□□□□□ -2.26
VPS54YDR027C SLM2P53955 656 aa0.92□□□□□ -2.26
VPS54YDR027C LPP1Q04396 274 aa0.92□□□□□ -2.26
VPS54YDR027C GRX8Q05926 109 aa0.92□□□□□ -2.26
VPS54YDR027C CDD1Q06549 142 aa0.92□□□□□ -2.26
VPS54YDR027C YET3Q07451 203 aa0.92□□□□□ -2.26
VPS54YDR027C GRE1Q08969 168 aa0.92□□□□□ -2.26
VPS54YDR027C VPS68Q12016 184 aa0.92□□□□□ -2.26
VPS54YDR027C GRX2P17695 143 aaKnown RBP0.92□□□□□ -2.26
VPS54YDR027C FIG1P38224 298 aa0.92□□□□□ -2.26
VPS54YDR027C PDS1P40316 373 aaPredicted RBP0.92□□□□□ -2.26
VPS54YDR027C LSM1P47017 172 aaKnown RBP0.92□□□□□ -2.26
VPS54YDR027C IRC18P47056 224 aa0.92□□□□□ -2.26
VPS54YDR027C TIM13P53299 105 aa0.92□□□□□ -2.26
Retrieved 100 of 5,963 RNA–protein pairs in 28 ms