RNA–Protein interactions for RNA: YBR263W

SHM1, Transcript of Mitochondrial serine hydroxymethyltransferase, yeast

Gene SHM1, Length 1,473 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM1	YBR263W	ADH6	Q04894	360 aa	Known RBP	4.61	□□□□□ -1.67
SHM1	YBR263W	FEX2	Q08991	375 aa		4.61	□□□□□ -1.67
SHM1	YBR263W	RPL15A	P05748	204 aa	Known RBP	4.6	□□□□□ -1.67
SHM1	YBR263W	ERG2	P32352	222 aa		4.6	□□□□□ -1.67
SHM1	YBR263W	CBT1	P36038	271 aa	Predicted RBP	4.6	□□□□□ -1.67
SHM1	YBR263W	YJL118W	P47022	219 aa		4.6	□□□□□ -1.67
SHM1	YBR263W	RPL15B	P54780	204 aa	Predicted RBP	4.6	□□□□□ -1.67
SHM1	YBR263W	YCL001W-B	Q96VH2	84 aa		4.6	□□□□□ -1.67
SHM1	YBR263W	QCR2	P07257	368 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	GCN3	P14741	305 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	LSB5	P25369	354 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	SPS18	P32572	300 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	LAG1	P38703	411 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	SSU72	P53538	206 aa	Predicted RBP	4.59	□□□□□ -1.67
SHM1	YBR263W	NGL2	Q03264	515 aa	Known RBP	4.59	□□□□□ -1.67
SHM1	YBR263W	MIX17	Q03667	156 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	FEX1	Q08913	375 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	YPR071W	Q12346	211 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	YOS1	Q3E834	85 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	DYN1	P36022	4092 aa		4.59	□□□□□ -1.67
SHM1	YBR263W	CCW14	O13547	238 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	TPI1	P00942	248 aa	Known RBP	4.58	□□□□□ -1.68
SHM1	YBR263W	GRX2	P17695	143 aa	Known RBP	4.58	□□□□□ -1.68
SHM1	YBR263W	OLE1	P21147	510 aa	Known RBP	4.58	□□□□□ -1.68
SHM1	YBR263W	ROX3	P25046	220 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	SUA5	P32579	426 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	YGR210C	P42942	411 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	YJL163C	P46996	555 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	YNL234W	P53857	426 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	STD1	Q02794	444 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	YFH1	Q07540	174 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	ATO3	Q12359	275 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	BOL1	Q3E793	110 aa		4.58	□□□□□ -1.68
SHM1	YBR263W	YMR31	P19955	123 aa		4.57	□□□□□ -1.68
SHM1	YBR263W	SAR1	P20606	190 aa	Known RBP	4.57	□□□□□ -1.68
SHM1	YBR263W	PMU1	P36069	295 aa		4.57	□□□□□ -1.68
SHM1	YBR263W	YPC1	P38298	316 aa		4.57	□□□□□ -1.68
SHM1	YBR263W	LSM8	P47093	109 aa	Known RBP	4.57	□□□□□ -1.68
SHM1	YBR263W	YJR056C	P47115	236 aa		4.57	□□□□□ -1.68
SHM1	YBR263W	LPP1	Q04396	274 aa		4.57	□□□□□ -1.68
SHM1	YBR263W	HOF1	Q05080	669 aa		4.57	□□□□□ -1.68
SHM1	YBR263W	COA4	Q05809	96 aa		4.57	□□□□□ -1.68
SHM1	YBR263W	TFB5	Q3E7C1	72 aa	Predicted RBP	4.57	□□□□□ -1.68
SHM1	YBR263W	BGL2	P15703	313 aa	Known RBP	4.56	□□□□□ -1.68
SHM1	YBR263W	CKS1	P20486	150 aa	Known RBP	4.56	□□□□□ -1.68
SHM1	YBR263W	IMD2	P38697	523 aa	Known RBP	4.56	□□□□□ -1.68
SHM1	YBR263W	YER188W	P40103	239 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	EOS1	P53938	366 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	VPS28	Q02767	242 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	YMR166C	Q03829	368 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	GTO3	Q04806	366 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	HRD1	Q08109	551 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	YOL029C	Q08187	201 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	FCY1	Q12178	158 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	YCT1	Q12235	531 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	YBR255C-A	Q3E776	120 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	VPS63	O13549	108 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	RPL9A	P05738	191 aa	Known RBP	4.56	□□□□□ -1.68
SHM1	YBR263W	MRS4	P23500	304 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	ECM31	P38122	312 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	YJR012C	P47087	207 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	MHR1	Q06630	226 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	ATG5	Q12380	294 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	PRM4	Q12498	284 aa		4.56	□□□□□ -1.68
SHM1	YBR263W	ACB1	P31787	87 aa		4.55	□□□□□ -1.68
SHM1	YBR263W	ELF1	P36053	145 aa		4.55	□□□□□ -1.68
SHM1	YBR263W	ERV15	P38312	142 aa		4.55	□□□□□ -1.68
SHM1	YBR263W	YHR138C	P38841	114 aa	Predicted RBP	4.55	□□□□□ -1.68
SHM1	YBR263W	YIR035C	P40579	254 aa		4.55	□□□□□ -1.68
SHM1	YBR263W	RPL9B	P51401	191 aa	Known RBP	4.55	□□□□□ -1.68
SHM1	YBR263W	YGR151C	P53287	111 aa		4.55	□□□□□ -1.68
SHM1	YBR263W	MOT3	P54785	490 aa	Known RBP	4.55	□□□□□ -1.68
SHM1	YBR263W	YPL108W	Q02872	168 aa	Predicted RBP	4.55	□□□□□ -1.68
SHM1	YBR263W	PAM18	Q07914	168 aa		4.55	□□□□□ -1.68
SHM1	YBR263W	RNA15	P25299	296 aa	Predicted RBP	4.54	□□□□□ -1.68
SHM1	YBR263W	YCR061W	P25639	631 aa		4.54	□□□□□ -1.68
SHM1	YBR263W	TIP1	P27654	210 aa	Predicted RBP	4.54	□□□□□ -1.68
SHM1	YBR263W	YKR045C	P36138	183 aa		4.54	□□□□□ -1.68
SHM1	YBR263W	YBR184W	P38299	523 aa		4.54	□□□□□ -1.68
SHM1	YBR263W	ARP3	P47117	449 aa	Known RBP	4.54	□□□□□ -1.68
SHM1	YBR263W	CRH1	P53301	507 aa		4.54	□□□□□ -1.68
SHM1	YBR263W	YAP1802	P53309	568 aa		4.54	□□□□□ -1.68
SHM1	YBR263W	DUG3	P53871	357 aa		4.54	□□□□□ -1.68
SHM1	YBR263W	SRL1	Q08673	210 aa		4.54	□□□□□ -1.68
SHM1	YBR263W	RAX2	Q12465	1220 aa		4.54	□□□□□ -1.68
SHM1	YBR263W	PHO85	P17157	305 aa		4.53	□□□□□ -1.68
SHM1	YBR263W	SEC22	P22214	214 aa		4.53	□□□□□ -1.68
SHM1	YBR263W	SUA7	P29055	345 aa	Predicted RBP	4.53	□□□□□ -1.68
SHM1	YBR263W	GSP1	P32835	219 aa	Known RBP	4.53	□□□□□ -1.68
SHM1	YBR263W	GSP2	P32836	220 aa	Known RBP	4.53	□□□□□ -1.68
SHM1	YBR263W	SRY1	P36007	326 aa		4.53	□□□□□ -1.68
SHM1	YBR263W	YIP1	P53039	248 aa		4.53	□□□□□ -1.68
SHM1	YBR263W	MSO1	P53604	210 aa	Known RBP	4.53	□□□□□ -1.68
SHM1	YBR263W	YIF1	P53845	314 aa	Known RBP	4.53	□□□□□ -1.68
SHM1	YBR263W	CWC27	Q02770	301 aa		4.53	□□□□□ -1.68
SHM1	YBR263W	RUB1	Q03919	77 aa		4.53	□□□□□ -1.68
SHM1	YBR263W	FSH2	Q05015	223 aa		4.53	□□□□□ -1.68
SHM1	YBR263W	MCH1	Q07376	486 aa		4.53	□□□□□ -1.68
SHM1	YBR263W	RRT7	Q07829	113 aa		4.53	□□□□□ -1.68
SHM1	YBR263W	MDM10	P18409	493 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 51.3 ms