RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PBKQ96KB5 322 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 PSTPIP2Q9H939 334 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 CD209Q9NNX6 404 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 DLGAP2Q9P1A6 1054 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 ZNFX1Q9P2E3 1918 aaKnown RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 CFAP69A5D8W1 941 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 CCT8L1PA6NM43 557 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 PPP1R12AO14974 1030 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 PDPK1O15530 556 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 DNAJC6O75061 913 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 HLA-DOAP06340 250 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 SNAP25P60880 206 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 DYNLT1P63172 113 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 SLC29A2Q14542 456 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 KCNB1Q14721 858 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 HAUS3Q68CZ6 603 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 CASC4Q6P4E1 433 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 TRPM8Q7Z2W7 1104 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 CROCCP2Q86T23 111 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 NLRP8Q86W28 1048 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 CEP70Q8NHQ1 597 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 C1orf54Q8WWF1 131 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 MTMR8Q96EF0 704 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 LRRC37BQ96QE4 947 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 TGS1Q96RS0 853 aaKnown RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 DDX20Q9UHI6 824 aaKnown RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 ANAPC5Q9UJX4 755 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 GGA1Q9UJY5 639 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 SUGT1Q9Y2Z0 365 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 PLXNA1Q9UIW2 1896 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 GRIN2DO15399 1336 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 MYO3BQ8WXR4 1341 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 A0A087X0T9 212 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 EXOC1LA0A1B0GW35 172 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 ARHGEF35A5YM69 484 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 FAM86C2PA6NEL3 165 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 GOLGA8RI6L899 631 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 EPHB6O15197 1021 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 STAMBPO95630 424 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 AFPP02771 609 aaKnown RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 FAM228BP0C875 321 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 EPHX2P34913 555 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 ATP2C1P98194 919 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 TTMPQ5BVD1 217 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 C10orf76Q5T2E6 689 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 C6orf15Q6UXA7 325 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 SGMS1Q86VZ5 419 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 SPATA24Q86W54 205 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 FAM178BQ8IXR5 827 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 PRCCQ92733 491 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 KIFAP3Q92845 792 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 GAL3ST3Q96A11 431 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 ZNF653Q96CK0 615 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 SH3GL3Q99963 347 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 TRIM9Q9C026 710 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 UBE2TQ9NPD8 197 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 ACTR10Q9NZ32 417 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 PPP1R9AQ9ULJ8 1098 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 NPHP3-ACAD11A0A0J9YXS1 232 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 A0A1W2PQC6 194 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 GYG2O15488 501 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ECEL1O95672 775 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 GNA14O95837 355 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ESRRAP11474 423 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 PRDX5P30044 214 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 GMPSP49915 693 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 MAP7Q14244 749 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ZNF423Q2M1K9 1284 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 MDH1BQ5I0G3 518 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 EFHC2Q5JST6 749 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 KCNV1Q6PIU1 500 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ARHGEF18Q6ZSZ5 1173 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 KCTD1Q719H9 257 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 SMC1BQ8NDV3 1235 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 PIGOQ8TEQ8 1089 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 IQCDQ96DY2 449 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 C9orf72Q96LT7 481 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 MIR1-1HGQ9H1L0 117 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 CUEDC2Q9H467 287 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 SMYD3Q9H7B4 428 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 VCPKMTQ9H867 229 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 TXNDC16Q9P2K2 825 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 HACL1Q9UJ83 578 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 I3L4J1 428 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 CAND2O75155 1236 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 DDAH1O94760 285 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 TDP2O95551 362 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 KITP10721 976 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ITGA4P13612 1032 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 SLC9A1P19634 815 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 EIF3BP55884 814 aaKnown RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 SEC23AQ15436 765 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 GRAMD1BQ3KR37 738 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ODR4Q5SWX8 454 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 PAPD7Q5XG87 772 aaKnown RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 TMEM154Q6P9G4 183 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 SUGP1Q8IWZ8 645 aaKnown RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 FAM186BQ8IYM0 893 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 FUKQ8N0W3 1084 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms