RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ORC1Q13415 861 aa14.7□□□□□ -0.06
PTPRF-202ENST00000372405 PTGISQ16647 500 aa14.7□□□□□ -0.06
PTPRF-202ENST00000372405 CPNE8Q86YQ8 564 aa14.7□□□□□ -0.06
PTPRF-202ENST00000372405 GPR161Q8N6U8 529 aaKnown RBP14.7□□□□□ -0.06
PTPRF-202ENST00000372405 CAGE1Q8TC20 777 aa14.7□□□□□ -0.06
PTPRF-202ENST00000372405 BTBD6Q96KE9 485 aa14.7□□□□□ -0.06
PTPRF-202ENST00000372405 AGO3Q9H9G7 860 aaKnown RBP14.7□□□□□ -0.06
PTPRF-202ENST00000372405 CNOT8Q9UFF9 292 aaKnown RBP14.7□□□□□ -0.06
PTPRF-202ENST00000372405 ST3GAL5Q9UNP4 418 aa14.7□□□□□ -0.06
PTPRF-202ENST00000372405 SMIM28A0A1B0GU29 152 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 M0QZ92 97 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 KCNK3O14649 394 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 RRM1P23921 792 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 YY1P25490 414 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 C2orf54Q08AI8 447 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 ITGA7Q13683 1181 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 C11orf63Q6NUN7 778 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 TRIM72Q6ZMU5 477 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 RSPH3Q86UC2 560 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 ZNF564Q8TBZ8 553 aaPredicted RBP14.69□□□□□ -0.06
PTPRF-202ENST00000372405 ELOVL4Q9GZR5 314 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 PDCL3Q9H2J4 239 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 TRMT13Q9NUP7 481 aaKnown RBP14.69□□□□□ -0.06
PTPRF-202ENST00000372405 ALG6Q9Y672 507 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 MEIS3P2A8K0S8 358 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 DDX3YO15523 660 aaKnown RBP14.69□□□□□ -0.06
PTPRF-202ENST00000372405 FKTNO75072 461 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 CILPO75339 1184 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 RPS6KA5O75582 802 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 THPOP40225 353 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 NSFP46459 744 aaKnown RBP14.69□□□□□ -0.06
PTPRF-202ENST00000372405 SMYD5Q6GMV2 418 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 TWF2Q6IBS0 349 aaKnown RBP14.69□□□□□ -0.06
PTPRF-202ENST00000372405 PHLDB2Q86SQ0 1253 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 RNF180Q86T96 592 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 PHF13Q86YI8 300 aaPredicted RBP14.69□□□□□ -0.06
PTPRF-202ENST00000372405 WDTC1Q8N5D0 677 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 SLC4A11Q8NBS3 891 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 SPATA4Q8NEY3 305 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 PARD6BQ9BYG5 372 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 TRIM7Q9C029 511 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 CYP3A43Q9HB55 503 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 UVRAGQ9P2Y5 699 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 AMFRQ9UKV5 643 aa14.69□□□□□ -0.06
PTPRF-202ENST00000372405 KCNE1P15382 129 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 YWHAEP62258 255 aaKnown RBP14.68□□□□□ -0.06
PTPRF-202ENST00000372405 ITIH3Q06033 890 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 SOX4Q06945 474 aaPredicted RBP14.68□□□□□ -0.06
PTPRF-202ENST00000372405 INCA1Q0VD86 236 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 TRIM71Q2Q1W2 868 aaKnown RBP14.68□□□□□ -0.06
PTPRF-202ENST00000372405 DCAF12L1Q5VU92 463 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 MSANTD4Q8NCY6 345 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 RPGRIP1Q96KN7 1286 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 PNKPQ96T60 521 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 C11orf70Q9BRQ4 267 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 AVENQ9NQS1 362 aaPredicted RBP14.68□□□□□ -0.06
PTPRF-202ENST00000372405 PARP2Q9UGN5 583 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 PCDHGC3Q9UN70 934 aa14.68□□□□□ -0.06
PTPRF-202ENST00000372405 CES2O00748 559 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 RHOXF2BP0C7M4 288 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 NFX1Q12986 1120 aaKnown RBP14.67□□□□□ -0.06
PTPRF-202ENST00000372405 MESDQ14696 234 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 C9orf57Q5W0N0 161 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 MMS22LQ6ZRQ5 1243 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 C1orf131Q8NDD1 294 aaKnown RBP14.67□□□□□ -0.06
PTPRF-202ENST00000372405 BEST2Q8NFU1 509 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 ALG3Q92685 438 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 RHOXF2Q9BQY4 288 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 GOLGA2P5Q9HBQ8 144 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 ADAM22Q9P0K1 906 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 TMEM110-MUSTN1A8MSY1 372 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 PTGESO14684 152 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 PAEPP09466 180 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 MYBL1P10243 752 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 COMTP21964 271 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 MMP8P22894 467 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 CDH5P33151 784 aaPredicted RBP14.67□□□□□ -0.06
PTPRF-202ENST00000372405 MARCKSL1P49006 195 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 RNASE9P60153 205 aaKnown RBP14.67□□□□□ -0.06
PTPRF-202ENST00000372405 TNNC1P63316 161 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 CFAP221Q4G0U5 840 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 DENND1BQ6P3S1 775 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 SLAIN1Q8ND83 568 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 CD101Q93033 1021 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 CALR3Q96L12 384 aaKnown RBP14.67□□□□□ -0.06
PTPRF-202ENST00000372405 RBM12Q9NTZ6 932 aaKnown RBP14.67□□□□□ -0.06
PTPRF-202ENST00000372405 RNF216Q9NWF9 866 aaPredicted RBP14.67□□□□□ -0.06
PTPRF-202ENST00000372405 RNF14Q9UBS8 474 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 UBQLN1Q9UMX0 589 aaKnown RBP14.67□□□□□ -0.06
PTPRF-202ENST00000372405 NME7Q9Y5B8 376 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 PTCH2Q9Y6C5 1203 aa14.67□□□□□ -0.06
PTPRF-202ENST00000372405 PIRO00625 290 aa14.66□□□□□ -0.06
PTPRF-202ENST00000372405 CABYRO75952 493 aa14.66□□□□□ -0.06
PTPRF-202ENST00000372405 LSM8O95777 96 aaKnown RBP14.66□□□□□ -0.06
PTPRF-202ENST00000372405 P4HA1P13674 534 aa14.66□□□□□ -0.06
PTPRF-202ENST00000372405 GRK4P32298 578 aa14.66□□□□□ -0.06
PTPRF-202ENST00000372405 PTPN11Q06124 597 aaPredicted RBP14.66□□□□□ -0.06
PTPRF-202ENST00000372405 C1QBPQ07021 282 aaKnown RBP14.66□□□□□ -0.06
PTPRF-202ENST00000372405 FBXO47Q5MNV8 452 aa14.66□□□□□ -0.06
PTPRF-202ENST00000372405 CCDC181Q5TID7 509 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms