RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 KCNK9Q9NPC2 374 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 ANKMY1Q9P2S6 941 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 POU2F3Q9UKI9 436 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 SLC8A2Q9UPR5 921 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 ERGIC3Q9Y282 383 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 TDRD9Q8NDG6 1382 aaKnown RBP9.04□□□□□ -0.96
TDP1-201ENST00000335725 H3BSA7 217 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 ZNF701M0R085 212 aaPredicted RBP9.04□□□□□ -0.96
TDP1-201ENST00000335725 DAPK3O43293 454 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 MAGEC1O60732 1142 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 DSC3Q14574 896 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 KCTD2Q14681 263 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 C6orf10Q5SRN2 563 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 HP1BP3Q5SSJ5 553 aaPredicted RBP9.04□□□□□ -0.96
TDP1-201ENST00000335725 TRAPPC3LQ5T215 181 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 ADAMTSL2Q86TH1 951 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 FLAD1Q8NFF5 587 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 ZNF486Q96H40 463 aaPredicted RBP9.04□□□□□ -0.96
TDP1-201ENST00000335725 NSL1Q96IY1 281 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 C7orf26Q96N11 449 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 TMEM206Q9H813 350 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 VPS45Q9NRW7 570 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 ECHDC1Q9NTX5 307 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 SALL4Q9UJQ4 1053 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 PREX1Q8TCU6 1659 aa9.04□□□□□ -0.96
TDP1-201ENST00000335725 SYCP2Q9BX26 1530 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 LGALS16A8MUM7 142 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 MIF4GDA9UHW6 222 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 TAF4O00268 1085 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 GSTM1P09488 218 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 ATP6V1B1P15313 513 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 CXCR2P25025 360 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 TRIM23P36406 574 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 ARL1P40616 181 aaPredicted RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 SLC9A3P48764 834 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 PRKCQQ04759 706 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 KLHL30Q0D2K2 578 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 KYNUQ16719 465 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 TAF1BQ53T94 588 aaPredicted RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 KCTD20Q7Z5Y7 419 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 METTL3Q86U44 580 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 AFAP1L2Q8N4X5 818 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 TSNARE1Q96NA8 513 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 RUNDC3BQ96NL0 473 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 MRPL39Q9NYK5 338 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 TMOD2Q9NZR1 351 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SOX13Q9UN79 622 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 GPSM3Q9Y4H4 160 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SLC4A4Q9Y6R1 1079 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SMCO2A6NFE2 343 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 POTECB2RU33 542 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 PSMD11O00231 422 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 CCRL2O00421 344 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SH2B2O14492 632 aaPredicted RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 DENRO43583 198 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 ITGAXP20702 1163 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 PGM1P36871 562 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 IREB2P48200 963 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 MARSP56192 900 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 TNFAIP8L3Q5GJ75 292 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SLFN13Q68D06 897 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 GALNT4Q8N4A0 578 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SLAIN1Q8ND83 568 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 HELQQ8TDG4 1101 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 ADAMTS16Q8TE57 1224 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 MIPEPQ99797 713 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 TDRD1Q9BXT4 1180 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 RHOBTB2Q9BYZ6 727 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 TXLNGYQ9BZA5 131 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 NEUROG2Q9H2A3 272 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SMARCAD1Q9H4L7 1026 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SERTAD1Q9UHV2 236 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 RWDD2AQ9UIY3 292 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 MRPL11Q9Y3B7 192 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 MYH1P12882 1939 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 TEX51A0A1B0GUA7 166 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 MYO1DO94832 1006 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 OLFM2O95897 454 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 CCDC130P13994 396 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 RFC1P35251 1148 aaPredicted RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 PHC1P78364 1004 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 EFTUD2Q15029 972 aaKnown RBP eCLIP9.03□□□□□ -0.962e-8■■■■■ 57.6
TDP1-201ENST00000335725 AGAP7PQ5VUJ5 663 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 CHADLQ6NUI6 762 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 NLRP10Q86W26 655 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SSH3Q8TE77 659 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 SCFD2Q8WU76 684 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 TRUB1Q8WWH5 349 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 SEC14L1Q92503 715 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 OMA1Q96E52 524 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 CLPBQ9H078 707 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 AGO2Q9UKV8 859 aaKnown RBP9.03□□□□□ -0.96
TDP1-201ENST00000335725 ARHGAP26Q9UNA1 814 aa9.03□□□□□ -0.96
TDP1-201ENST00000335725 PLEKHG3A1L390 1219 aa9.02□□□□□ -0.97
TDP1-201ENST00000335725 MAGEB16A2A368 324 aa9.02□□□□□ -0.97
TDP1-201ENST00000335725 PLSCR1O15162 318 aa9.02□□□□□ -0.97
TDP1-201ENST00000335725 FOXN1O15353 648 aa9.02□□□□□ -0.97
TDP1-201ENST00000335725 POLR2DO15514 142 aaKnown RBP9.02□□□□□ -0.97
TDP1-201ENST00000335725 PEX1O43933 1283 aa9.02□□□□□ -0.97
TDP1-201ENST00000335725 ITGB3P05106 788 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms