RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W APQ12P40532 138 aa2.55□□□□□ -2
UBP8YMR223W RPA43P46669 326 aa2.55□□□□□ -2
UBP8YMR223W YGR050CP53231 118 aa2.55□□□□□ -2
UBP8YMR223W CAB4P53332 305 aa2.55□□□□□ -2
UBP8YMR223W CWC27Q02770 301 aa2.55□□□□□ -2
UBP8YMR223W YPL113CQ02961 396 aa2.55□□□□□ -2
UBP8YMR223W DML1Q03652 475 aa2.55□□□□□ -2
UBP8YMR223W YDR391CQ04170 232 aa2.55□□□□□ -2
UBP8YMR223W HPT1Q04178 221 aaKnown RBP2.55□□□□□ -2
UBP8YMR223W MRX8Q05473 314 aa2.55□□□□□ -2
UBP8YMR223W YPL278CQ08990 100 aa2.55□□□□□ -2
UBP8YMR223W ATP16Q12165 160 aa2.55□□□□□ -2
UBP8YMR223W TIR4Q12218 487 aaPredicted RBP2.55□□□□□ -2
UBP8YMR223W RTR2Q12378 196 aa2.55□□□□□ -2
UBP8YMR223W PSF1Q12488 208 aa2.55□□□□□ -2
UBP8YMR223W NUP157P40064 1391 aaKnown RBP2.55□□□□□ -2
UBP8YMR223W BUD4P47136 1447 aa2.55□□□□□ -2
UBP8YMR223W MBF1O14467 151 aaKnown RBP2.54□□□□□ -2
UBP8YMR223W CDC7P06243 507 aa2.54□□□□□ -2
UBP8YMR223W PBI2P0CT04 75 aaKnown RBP2.54□□□□□ -2
UBP8YMR223W SNF4P12904 322 aa2.54□□□□□ -2
UBP8YMR223W MRP49P32388 137 aa2.54□□□□□ -2
UBP8YMR223W PAN3P36102 679 aaPredicted RBP2.54□□□□□ -2
UBP8YMR223W VMA7P39111 118 aa2.54□□□□□ -2
UBP8YMR223W CAT5P41735 233 aa2.54□□□□□ -2
UBP8YMR223W MDM34P53083 459 aa2.54□□□□□ -2
UBP8YMR223W ARO8P53090 500 aaKnown RBP2.54□□□□□ -2
UBP8YMR223W CLD1P53264 445 aa2.54□□□□□ -2
UBP8YMR223W LSM3P57743 89 aaKnown RBP2.54□□□□□ -2
UBP8YMR223W HHT1P61830 136 aa2.54□□□□□ -2
UBP8YMR223W SAE3P89114 91 aa2.54□□□□□ -2
UBP8YMR223W COF1Q03048 143 aaKnown RBP2.54□□□□□ -2
UBP8YMR223W PLP1Q04004 230 aa2.54□□□□□ -2
UBP8YMR223W YLR099W-AQ3E798 87 aa2.54□□□□□ -2
UBP8YMR223W PDR18P53756 1333 aa2.54□□□□□ -2
UBP8YMR223W RPL25P04456 142 aaKnown RBP2.53□□□□□ -2
UBP8YMR223W CNB1P25296 175 aa2.53□□□□□ -2
UBP8YMR223W YBL010CP32788 280 aa2.53□□□□□ -2
UBP8YMR223W SFC1P33303 322 aa2.53□□□□□ -2
UBP8YMR223W YBR242WP38331 238 aa2.53□□□□□ -2
UBP8YMR223W LSM12P38828 187 aaKnown RBP2.53□□□□□ -2
UBP8YMR223W PTI1P39927 425 aaPredicted RBP2.53□□□□□ -2
UBP8YMR223W MNN5P46982 586 aa2.53□□□□□ -2
UBP8YMR223W ILM1P47155 203 aa2.53□□□□□ -2
UBP8YMR223W UFD1P53044 361 aa2.53□□□□□ -2
UBP8YMR223W THI74Q04083 370 aa2.53□□□□□ -2
UBP8YMR223W YMR253CQ04835 414 aa2.53□□□□□ -2
UBP8YMR223W YLR179CQ06252 201 aaKnown RBP2.53□□□□□ -2
UBP8YMR223W IES3Q12345 250 aa2.53□□□□□ -2
UBP8YMR223W ADH1P00330 348 aaKnown RBP2.52□□□□□ -2.01
UBP8YMR223W ADK1P07170 222 aaKnown RBP2.52□□□□□ -2.01
UBP8YMR223W GPA2P10823 449 aa2.52□□□□□ -2.01
UBP8YMR223W RPL30P14120 105 aaKnown RBP2.52□□□□□ -2.01
UBP8YMR223W SPO13P23624 291 aa2.52□□□□□ -2.01
UBP8YMR223W URA10P30402 227 aa2.52□□□□□ -2.01
UBP8YMR223W FMT1P32785 401 aa2.52□□□□□ -2.01
UBP8YMR223W SHE2P36068 246 aaKnown RBP RIP-Chip data2.52□□□□□ -2.01not detected
UBP8YMR223W POP8P38208 133 aa2.52□□□□□ -2.01
UBP8YMR223W YBR220CP38318 560 aa2.52□□□□□ -2.01
UBP8YMR223W GGC1P38988 300 aa2.52□□□□□ -2.01
UBP8YMR223W AST2P39945 430 aaKnown RBP2.52□□□□□ -2.01
UBP8YMR223W HMF1P40037 129 aaKnown RBP2.52□□□□□ -2.01
UBP8YMR223W AYR1P40471 297 aa2.52□□□□□ -2.01
UBP8YMR223W BUD13P46947 266 aaPredicted RBP2.52□□□□□ -2.01
UBP8YMR223W OST2P46964 130 aa2.52□□□□□ -2.01
UBP8YMR223W ARP3P47117 449 aaKnown RBP2.52□□□□□ -2.01
UBP8YMR223W PGA1P53896 198 aa2.52□□□□□ -2.01
UBP8YMR223W SLM2P53955 656 aa2.52□□□□□ -2.01
UBP8YMR223W GOT1Q03554 138 aa2.52□□□□□ -2.01
UBP8YMR223W AIM36Q03798 255 aa2.52□□□□□ -2.01
UBP8YMR223W NKP2Q06162 153 aa2.52□□□□□ -2.01
UBP8YMR223W CNL1Q06333 122 aa2.52□□□□□ -2.01
UBP8YMR223W SYC1Q08553 188 aaPredicted RBP2.52□□□□□ -2.01
UBP8YMR223W YPL245WQ12179 454 aaKnown RBP2.52□□□□□ -2.01
UBP8YMR223W YPR011CQ12251 326 aa2.52□□□□□ -2.01
UBP8YMR223W TY1B-HO13535 1793 aa2.52□□□□□ -2.01
UBP8YMR223W Q0255P03881 472 aa2.51□□□□□ -2.01
UBP8YMR223W NSP1P14907 823 aaKnown RBP2.51□□□□□ -2.01
UBP8YMR223W CKS1P20486 150 aaKnown RBP2.51□□□□□ -2.01
UBP8YMR223W STP22P25604 385 aa2.51□□□□□ -2.01
UBP8YMR223W SMP1P38128 452 aa2.51□□□□□ -2.01
UBP8YMR223W GPI18P38211 433 aa2.51□□□□□ -2.01
UBP8YMR223W EDC2P40023 145 aaPredicted RBP2.51□□□□□ -2.01
UBP8YMR223W YNL208WP40159 199 aaKnown RBP2.51□□□□□ -2.01
UBP8YMR223W YPL073CP40323 161 aa2.51□□□□□ -2.01
UBP8YMR223W ATG18P43601 500 aa2.51□□□□□ -2.01
UBP8YMR223W FIP1P45976 327 aa2.51□□□□□ -2.01
UBP8YMR223W PAC10P48363 199 aa2.51□□□□□ -2.01
UBP8YMR223W BNS1P50084 137 aa2.51□□□□□ -2.01
UBP8YMR223W SDS23P53172 527 aa2.51□□□□□ -2.01
UBP8YMR223W AAH1P53909 347 aa2.51□□□□□ -2.01
UBP8YMR223W VPS71Q03433 280 aa2.51□□□□□ -2.01
UBP8YMR223W GAS3Q03655 524 aa2.51□□□□□ -2.01
UBP8YMR223W ATG39Q06159 398 aa2.51□□□□□ -2.01
UBP8YMR223W YLR177WQ06251 628 aa2.51□□□□□ -2.01
UBP8YMR223W MCH1Q07376 486 aa2.51□□□□□ -2.01
UBP8YMR223W FSF1Q12029 327 aaKnown RBP2.51□□□□□ -2.01
UBP8YMR223W MPD1Q12404 318 aaKnown RBP2.51□□□□□ -2.01
UBP8YMR223W YBL008W-AQ3E821 79 aa2.51□□□□□ -2.01
UBP8YMR223W TDA8Q6B2U8 126 aa2.51□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 56.8 ms