RNA–Protein interactions for RNA: YKR029C

SET3, Transcript of Defining member of the SET3 histone deacetylase complex, yeast

Gene SET3, Length 2,256 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SET3	YKR029C	CGR1	P53188	120 aa		0.78	□□□□□ -2.28
SET3	YKR029C	YGR219W	P53307	113 aa		0.78	□□□□□ -2.28
SET3	YKR029C	CAB4	P53332	305 aa		0.78	□□□□□ -2.28
SET3	YKR029C	ERV29	P53337	310 aa		0.78	□□□□□ -2.28
SET3	YKR029C	DID2	P69771	204 aa		0.78	□□□□□ -2.28
SET3	YKR029C	DAD3	P69850	94 aa		0.78	□□□□□ -2.28
SET3	YKR029C	NIP7	Q08962	181 aa	Known RBP	0.78	□□□□□ -2.28
SET3	YKR029C	ATO3	Q12359	275 aa		0.78	□□□□□ -2.28
SET3	YKR029C	DYN1	P36022	4092 aa		0.78	□□□□□ -2.28
SET3	YKR029C	MDN1	Q12019	4910 aa	Known RBP	0.78	□□□□□ -2.28
SET3	YKR029C	SEN1	Q00416	2231 aa	Known RBP	0.78	□□□□□ -2.28
SET3	YKR029C	COX5A	P00424	153 aa		0.78	□□□□□ -2.28
SET3	YKR029C	RPB4	P20433	221 aa	Predicted RBP	0.78	□□□□□ -2.28
SET3	YKR029C	ATG22	P25568	528 aa		0.78	□□□□□ -2.28
SET3	YKR029C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.78	□□□□□ -2.28	not detected
SET3	YKR029C	DOG2	P38773	246 aa		0.78	□□□□□ -2.28
SET3	YKR029C	DOG1	P38774	246 aa		0.78	□□□□□ -2.28
SET3	YKR029C	PEX17	P40155	199 aa		0.78	□□□□□ -2.28
SET3	YKR029C	ERG25	P53045	309 aa		0.78	□□□□□ -2.28
SET3	YKR029C	PRM8	P53174	237 aa		0.78	□□□□□ -2.28
SET3	YKR029C	TIM11	P81449	96 aa	Predicted RBP	0.78	□□□□□ -2.28
SET3	YKR029C	MSA1	Q08471	629 aa		0.78	□□□□□ -2.28
SET3	YKR029C	JLP1	Q12358	412 aa		0.78	□□□□□ -2.28
SET3	YKR029C	ACC1	Q00955	2233 aa	Known RBP	0.77	□□□□□ -2.29
SET3	YKR029C	CDC8	P00572	216 aa		0.77	□□□□□ -2.29
SET3	YKR029C	YPR170W-B	P0C5R9	85 aa		0.77	□□□□□ -2.29
SET3	YKR029C	FBA1	P14540	359 aa	Known RBP	0.77	□□□□□ -2.29
SET3	YKR029C	DOA4	P32571	926 aa		0.77	□□□□□ -2.29
SET3	YKR029C	PRP18	P33411	251 aa	Predicted RBP	0.77	□□□□□ -2.29
SET3	YKR029C	SKG1	P36169	355 aa		0.77	□□□□□ -2.29
SET3	YKR029C	ECM33	P38248	429 aa	Known RBP	0.77	□□□□□ -2.29
SET3	YKR029C	FAR7	P43592	221 aa		0.77	□□□□□ -2.29
SET3	YKR029C	RPA43	P46669	326 aa		0.77	□□□□□ -2.29
SET3	YKR029C	CIS3	P47001	227 aa		0.77	□□□□□ -2.29
SET3	YKR029C	BXI1	P48558	297 aa		0.77	□□□□□ -2.29
SET3	YKR029C	RAD17	P48581	401 aa		0.77	□□□□□ -2.29
SET3	YKR029C	YDR248C	Q03786	193 aa		0.77	□□□□□ -2.29
SET3	YKR029C	YMR226C	Q05016	267 aa	Known RBP	0.77	□□□□□ -2.29
SET3	YKR029C	NEJ1	Q06148	342 aa		0.77	□□□□□ -2.29
SET3	YKR029C	YKL183C-A	Q3E765	70 aa		0.77	□□□□□ -2.29
SET3	YKR029C	UTP10	P42945	1769 aa	Known RBP	0.77	□□□□□ -2.29
SET3	YKR029C	HKR1	P41809	1802 aa		0.77	□□□□□ -2.29
SET3	YKR029C	TUS1	Q06412	1307 aa		0.77	□□□□□ -2.29
SET3	YKR029C	CDC28	P00546	298 aa	Known RBP	0.77	□□□□□ -2.29
SET3	YKR029C	CDC33	P07260	213 aa	Known RBP	0.77	□□□□□ -2.29
SET3	YKR029C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.77	□□□□□ -2.29	not detected
SET3	YKR029C	PEX4	P29340	183 aa		0.77	□□□□□ -2.29
SET3	YKR029C	MGM101	P32787	269 aa	Known RBP	0.77	□□□□□ -2.29
SET3	YKR029C	APS1	P35181	156 aa		0.77	□□□□□ -2.29
SET3	YKR029C	CBT1	P36038	271 aa	Predicted RBP	0.77	□□□□□ -2.29
SET3	YKR029C	NRG2	P38082	220 aa		0.77	□□□□□ -2.29
SET3	YKR029C	URA8	P38627	578 aa	Predicted RBP	0.77	□□□□□ -2.29
SET3	YKR029C	ERG28	P40030	148 aa		0.77	□□□□□ -2.29
SET3	YKR029C	YNL194C	P40169	301 aa		0.77	□□□□□ -2.29
SET3	YKR029C	TOS8	P53147	276 aa		0.77	□□□□□ -2.29
SET3	YKR029C	YNL010W	P53981	241 aa	Known RBP	0.77	□□□□□ -2.29
SET3	YKR029C	SNZ1	Q03148	297 aa		0.77	□□□□□ -2.29
SET3	YKR029C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.77	□□□□□ -2.29	not detected
SET3	YKR029C	BOL1	Q3E793	110 aa		0.77	□□□□□ -2.29
SET3	YKR029C	UBR2	Q07963	1872 aa		0.77	□□□□□ -2.29
SET3	YKR029C	MRPS28	P21771	286 aa		0.76	□□□□□ -2.29
SET3	YKR029C	MRPL28	P36527	147 aa		0.76	□□□□□ -2.29
SET3	YKR029C	POP4	P38336	279 aa		0.76	□□□□□ -2.29
SET3	YKR029C	TRM5	P38793	499 aa		0.76	□□□□□ -2.29
SET3	YKR029C	TVP23	P38962	199 aa		0.76	□□□□□ -2.29
SET3	YKR029C	RMD6	P39975	231 aa		0.76	□□□□□ -2.29
SET3	YKR029C	VTC1	P40046	129 aa	RIP-Chip data	0.76	□□□□□ -2.29	not detected
SET3	YKR029C	SMD3	P43321	101 aa	Known RBP	0.76	□□□□□ -2.29
SET3	YKR029C	IRC18	P47056	224 aa		0.76	□□□□□ -2.29
SET3	YKR029C	ADO1	P47143	340 aa	Known RBP	0.76	□□□□□ -2.29
SET3	YKR029C	DAN1	P47178	298 aa		0.76	□□□□□ -2.29
SET3	YKR029C	MGA1	P53050	456 aa		0.76	□□□□□ -2.29
SET3	YKR029C	ALG13	P53178	202 aa		0.76	□□□□□ -2.29
SET3	YKR029C	LPP1	Q04396	274 aa		0.76	□□□□□ -2.29
SET3	YKR029C	USB1	Q12208	290 aa	Known RBP	0.76	□□□□□ -2.29
SET3	YKR029C	GCN3	P14741	305 aa		0.76	□□□□□ -2.29
SET3	YKR029C	GRX2	P17695	143 aa	Known RBP	0.76	□□□□□ -2.29
SET3	YKR029C	DBF2	P22204	572 aa		0.76	□□□□□ -2.29
SET3	YKR029C	OAC1	P32332	324 aa		0.76	□□□□□ -2.29
SET3	YKR029C	PRX1	P34227	261 aa	Known RBP	0.76	□□□□□ -2.29
SET3	YKR029C	YKT6	P36015	200 aa	Known RBP	0.76	□□□□□ -2.29
SET3	YKR029C	PHO88	P38264	188 aa	Predicted RBP	0.76	□□□□□ -2.29
SET3	YKR029C	ERV15	P38312	142 aa		0.76	□□□□□ -2.29
SET3	YKR029C	RTC3	P38804	111 aa	Predicted RBP	0.76	□□□□□ -2.29
SET3	YKR029C	AST2	P39945	430 aa	Known RBP	0.76	□□□□□ -2.29
SET3	YKR029C	YKE4	P40544	346 aa		0.76	□□□□□ -2.29
SET3	YKR029C	MRPS8	Q03799	155 aa		0.76	□□□□□ -2.29
SET3	YKR029C	YRA1	Q12159	226 aa	Known RBP	0.76	□□□□□ -2.29
SET3	YKR029C	MDM32	Q12171	622 aa		0.76	□□□□□ -2.29
SET3	YKR029C	GIS3	Q12418	502 aa		0.76	□□□□□ -2.29
SET3	YKR029C	CDC36	P06100	191 aa	Predicted RBP	0.75	□□□□□ -2.29
SET3	YKR029C	SCL1	P21243	252 aa	Known RBP	0.75	□□□□□ -2.29
SET3	YKR029C	YHR180W	P38868	163 aa		0.75	□□□□□ -2.29
SET3	YKR029C	RFC4	P40339	323 aa	Known RBP	0.75	□□□□□ -2.29
SET3	YKR029C	PGD1	P40356	397 aa		0.75	□□□□□ -2.29
SET3	YKR029C	RPL33B	P41056	107 aa	Known RBP	0.75	□□□□□ -2.29
SET3	YKR029C	YJL027C	P47063	138 aa	Predicted RBP	0.75	□□□□□ -2.29
SET3	YKR029C	CWC23	P52868	283 aa	Predicted RBP	0.75	□□□□□ -2.29
SET3	YKR029C	AIF1	P52923	378 aa		0.75	□□□□□ -2.29
SET3	YKR029C	PDR17	P53844	350 aa		0.75	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 66.4 ms