RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C PEX17P40155 199 aa0.98□□□□□ -2.25
VPS54YDR027C SOK1P40317 901 aa0.98□□□□□ -2.25
VPS54YDR027C PRM15Q03262 622 aa0.98□□□□□ -2.25
VPS54YDR027C YDR114CQ04597 100 aa0.98□□□□□ -2.25
VPS54YDR027C SLD7Q08457 257 aa0.98□□□□□ -2.25
VPS54YDR027C FEX1Q08913 375 aa0.98□□□□□ -2.25
VPS54YDR027C FEX2Q08991 375 aa0.98□□□□□ -2.25
VPS54YDR027C SMT3Q12306 101 aaKnown RBP0.98□□□□□ -2.25
VPS54YDR027C DCN1Q12395 269 aa0.98□□□□□ -2.25
VPS54YDR027C RPL28P02406 149 aaKnown RBP0.97□□□□□ -2.25
VPS54YDR027C SGA1P08019 549 aa0.97□□□□□ -2.25
VPS54YDR027C DBF2P22204 572 aa0.97□□□□□ -2.25
VPS54YDR027C UBC6P33296 250 aaPredicted RBP0.97□□□□□ -2.25
VPS54YDR027C YPT52P36018 234 aaKnown RBP0.97□□□□□ -2.25
VPS54YDR027C SSH1P38353 490 aaKnown RBP0.97□□□□□ -2.25
VPS54YDR027C GON7P46984 123 aa0.97□□□□□ -2.25
VPS54YDR027C MCM22P47167 239 aa0.97□□□□□ -2.25
VPS54YDR027C YGL159WP53110 370 aa0.97□□□□□ -2.25
VPS54YDR027C CAB4P53332 305 aa0.97□□□□□ -2.25
VPS54YDR027C SSU72P53538 206 aaPredicted RBP0.97□□□□□ -2.25
VPS54YDR027C MRPS17Q03246 237 aaPredicted RBP0.97□□□□□ -2.25
VPS54YDR027C SSQ1Q05931 657 aaPredicted RBP0.97□□□□□ -2.25
VPS54YDR027C TPO4Q12256 659 aa0.97□□□□□ -2.25
VPS54YDR027C Q0297Q9ZZV8 51 aa0.97□□□□□ -2.25
VPS54YDR027C COX5AP00424 153 aa0.97□□□□□ -2.25
VPS54YDR027C CDC28P00546 298 aaKnown RBP0.97□□□□□ -2.25
VPS54YDR027C SPT3P06844 337 aa0.97□□□□□ -2.25
VPS54YDR027C URA6P15700 204 aa0.97□□□□□ -2.25
VPS54YDR027C APA2P22108 325 aa0.97□□□□□ -2.25
VPS54YDR027C ERG24P32462 438 aaKnown RBP0.97□□□□□ -2.25
VPS54YDR027C CIN5P40917 295 aa0.97□□□□□ -2.25
VPS54YDR027C CAT5P41735 233 aa0.97□□□□□ -2.25
VPS54YDR027C BUD13P46947 266 aaPredicted RBP0.97□□□□□ -2.25
VPS54YDR027C SPC2Q04969 178 aa0.97□□□□□ -2.25
VPS54YDR027C RIO1Q12196 484 aaKnown RBP0.97□□□□□ -2.25
VPS54YDR027C JLP1Q12358 412 aa0.97□□□□□ -2.25
VPS54YDR027C RPL27AP0C2H6 136 aaKnown RBP0.96□□□□□ -2.26
VPS54YDR027C RPL27BP0C2H7 136 aaKnown RBP0.96□□□□□ -2.26
VPS54YDR027C MATALPHA2P0CY08 210 aa0.96□□□□□ -2.26
VPS54YDR027C HMLALPHA2P0CY09 210 aa0.96□□□□□ -2.26
VPS54YDR027C CBF1P17106 351 aa0.96□□□□□ -2.26
VPS54YDR027C RFA3P26755 122 aaKnown RBP0.96□□□□□ -2.26
VPS54YDR027C OAC1P32332 324 aa0.96□□□□□ -2.26
VPS54YDR027C RCN1P36054 211 aa0.96□□□□□ -2.26
VPS54YDR027C SDH4P37298 181 aa0.96□□□□□ -2.26
VPS54YDR027C TRM5P38793 499 aa0.96□□□□□ -2.26
VPS54YDR027C YER188WP40103 239 aa0.96□□□□□ -2.26
VPS54YDR027C YER189WP40104 122 aa0.96□□□□□ -2.26
VPS54YDR027C PRE6P40303 254 aaKnown RBP0.96□□□□□ -2.26
VPS54YDR027C NUP57P48837 541 aa0.96□□□□□ -2.26
VPS54YDR027C SYF2P53277 215 aaPredicted RBP0.96□□□□□ -2.26
VPS54YDR027C ERV29P53337 310 aa0.96□□□□□ -2.26
VPS54YDR027C CUS2P53830 285 aaPredicted RBP0.96□□□□□ -2.26
VPS54YDR027C YMR226CQ05016 267 aaKnown RBP0.96□□□□□ -2.26
VPS54YDR027C HEM25Q07534 307 aa0.96□□□□□ -2.26
VPS54YDR027C YCL012CQ8J0M4 134 aa0.96□□□□□ -2.26
VPS54YDR027C JIP3O13555 125 aa0.96□□□□□ -2.26
VPS54YDR027C HTB1P02293 131 aaKnown RBP0.96□□□□□ -2.26
VPS54YDR027C HTB2P02294 131 aa0.96□□□□□ -2.26
VPS54YDR027C SCL1P21243 252 aaKnown RBP0.96□□□□□ -2.26
VPS54YDR027C MIG1P27705 504 aa0.96□□□□□ -2.26
VPS54YDR027C SPS18P32572 300 aa0.96□□□□□ -2.26
VPS54YDR027C ECM4P36156 370 aa0.96□□□□□ -2.26
VPS54YDR027C SPO73P40031 143 aa0.96□□□□□ -2.26
VPS54YDR027C HAM1P47119 197 aaKnown RBP0.96□□□□□ -2.26
VPS54YDR027C BRX1Q08235 291 aaKnown RBP0.96□□□□□ -2.26
VPS54YDR027C GET4Q12125 312 aa0.96□□□□□ -2.26
VPS54YDR027C NCB2Q92317 146 aa0.96□□□□□ -2.26
VPS54YDR027C YLR462WO13556 202 aa0.95□□□□□ -2.26
VPS54YDR027C DSF1P0CX08 502 aa0.95□□□□□ -2.26
VPS54YDR027C YNR073CP0CX09 502 aa0.95□□□□□ -2.26
VPS54YDR027C IDH1P28834 360 aaKnown RBP RIP-Chip data0.95□□□□□ -2.26not detected
VPS54YDR027C MGM101P32787 269 aaKnown RBP0.95□□□□□ -2.26
VPS54YDR027C YEL075CP39972 122 aa0.95□□□□□ -2.26
VPS54YDR027C RFC4P40339 323 aaKnown RBP0.95□□□□□ -2.26
VPS54YDR027C SMD3P43321 101 aaKnown RBP0.95□□□□□ -2.26
VPS54YDR027C RPA43P46669 326 aa0.95□□□□□ -2.26
VPS54YDR027C BRR6P53062 197 aa0.95□□□□□ -2.26
VPS54YDR027C NOP19P53317 196 aaPredicted RBP0.95□□□□□ -2.26
VPS54YDR027C GAS3Q03655 524 aa0.95□□□□□ -2.26
VPS54YDR027C NIP7Q08962 181 aaKnown RBP0.95□□□□□ -2.26
VPS54YDR027C GPM2Q12008 311 aa0.95□□□□□ -2.26
VPS54YDR027C YOR289WQ12012 251 aaPredicted RBP0.95□□□□□ -2.26
VPS54YDR027C YHR032W-AP0C5N6 59 aa0.95□□□□□ -2.26
VPS54YDR027C YPK2P18961 677 aa0.95□□□□□ -2.26
VPS54YDR027C YGP1P38616 354 aaKnown RBP0.95□□□□□ -2.26
VPS54YDR027C SEC72P39742 193 aaKnown RBP0.95□□□□□ -2.26
VPS54YDR027C ALB1P47019 175 aaPredicted RBP0.95□□□□□ -2.26
VPS54YDR027C SNX4P47057 423 aa0.95□□□□□ -2.26
VPS54YDR027C BXI1P48558 297 aa0.95□□□□□ -2.26
VPS54YDR027C YGL088WP53151 121 aa0.95□□□□□ -2.26
VPS54YDR027C GTR2P53290 341 aa0.95□□□□□ -2.26
VPS54YDR027C FYV6P53913 173 aa0.95□□□□□ -2.26
VPS54YDR027C FAR8Q05040 523 aa0.95□□□□□ -2.26
VPS54YDR027C HTL1Q9URQ5 78 aa0.95□□□□□ -2.26
VPS54YDR027C QCR2P07257 368 aa0.94□□□□□ -2.26
VPS54YDR027C CAF4P36130 643 aa0.94□□□□□ -2.26
VPS54YDR027C IKI1P38874 309 aa0.94□□□□□ -2.26
VPS54YDR027C AVT2P39981 480 aa0.94□□□□□ -2.26
VPS54YDR027C AGE2P40529 298 aa0.94□□□□□ -2.26
Retrieved 100 of 5,963 RNA–protein pairs in 32.8 ms