RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W TRM5P38793 499 aa1.79□□□□□ -2.12
SHR3YDL212W EGD2P38879 174 aaKnown RBP1.79□□□□□ -2.12
SHR3YDL212W TIR3P40552 269 aa1.79□□□□□ -2.12
SHR3YDL212W GRE1Q08969 168 aa1.79□□□□□ -2.12
SHR3YDL212W YPL162CQ12042 273 aa1.79□□□□□ -2.12
SHR3YDL212W YCL012CQ8J0M4 134 aa1.79□□□□□ -2.12
SHR3YDL212W TIM9O74700 87 aa1.78□□□□□ -2.12
SHR3YDL212W MRPS28P21771 286 aa1.78□□□□□ -2.12
SHR3YDL212W VPS51P36116 164 aa1.78□□□□□ -2.12
SHR3YDL212W RMD6P39975 231 aa1.78□□□□□ -2.12
SHR3YDL212W YNR077CP53758 84 aa1.78□□□□□ -2.12
SHR3YDL212W LSM7P53905 115 aaKnown RBP1.78□□□□□ -2.12
SHR3YDL212W TSC3Q3E790 80 aa1.78□□□□□ -2.12
SHR3YDL212W SKG1P36169 355 aa1.77□□□□□ -2.13
SHR3YDL212W UMP1P38293 148 aa1.77□□□□□ -2.13
SHR3YDL212W AVT2P39981 480 aa1.77□□□□□ -2.13
SHR3YDL212W VTC1P40046 129 aaRIP-Chip data1.77□□□□□ -2.13not detected
SHR3YDL212W GLE2P40066 365 aa1.77□□□□□ -2.13
SHR3YDL212W ERG10P41338 398 aaKnown RBP1.77□□□□□ -2.13
SHR3YDL212W YDR249CQ03787 373 aa1.77□□□□□ -2.13
SHR3YDL212W SML1Q04964 104 aa1.77□□□□□ -2.13
SHR3YDL212W YNG1Q08465 219 aa1.77□□□□□ -2.13
SHR3YDL212W YFR032C-BQ8TGU2 87 aa1.77□□□□□ -2.13
SHR3YDL212W PDR18P53756 1333 aa1.76□□□□□ -2.13
SHR3YDL212W YOL162WP0CF19 215 aa1.76□□□□□ -2.13
SHR3YDL212W SRP14P38985 146 aa1.76□□□□□ -2.13
SHR3YDL212W YNL217WP40152 326 aa1.76□□□□□ -2.13
SHR3YDL212W RPL35AP0CX84 120 aaKnown RBP1.75□□□□□ -2.13
SHR3YDL212W RPL35BP0CX85 120 aaKnown RBP1.75□□□□□ -2.13
SHR3YDL212W MAG1P22134 296 aaKnown RBP1.75□□□□□ -2.13
SHR3YDL212W FZF1P32805 299 aa1.75□□□□□ -2.13
SHR3YDL212W YKR045CP36138 183 aa1.75□□□□□ -2.13
SHR3YDL212W AST2P39945 430 aaKnown RBP1.75□□□□□ -2.13
SHR3YDL212W GVP36P40531 326 aaKnown RBP1.75□□□□□ -2.13
SHR3YDL212W YIP3P53633 176 aa1.75□□□□□ -2.13
SHR3YDL212W COG5P53951 403 aa1.75□□□□□ -2.13
SHR3YDL212W GGA1Q06336 557 aa1.75□□□□□ -2.13
SHR3YDL212W YOL160WQ08321 113 aa1.75□□□□□ -2.13
SHR3YDL212W RPL25P04456 142 aaKnown RBP1.74□□□□□ -2.13
SHR3YDL212W RPB3P16370 318 aaKnown RBP1.74□□□□□ -2.13
SHR3YDL212W BET1P22804 142 aa1.74□□□□□ -2.13
SHR3YDL212W YET1P35723 206 aa1.74□□□□□ -2.13
SHR3YDL212W YBR219CP38317 127 aa1.74□□□□□ -2.13
SHR3YDL212W POG1P40473 351 aa1.74□□□□□ -2.13
SHR3YDL212W MMS2P53152 137 aa1.74□□□□□ -2.13
SHR3YDL212W BUD25P85052 153 aa1.74□□□□□ -2.13
SHR3YDL212W FSF1Q12029 327 aaKnown RBP1.74□□□□□ -2.13
SHR3YDL212W YIL177CP40434 1758 aa1.73□□□□□ -2.13
SHR3YDL212W YJL225CP40889 1758 aa1.73□□□□□ -2.13
SHR3YDL212W QCR2P07257 368 aa1.73□□□□□ -2.13
SHR3YDL212W URA5P13298 226 aaKnown RBP1.73□□□□□ -2.13
SHR3YDL212W ATP15P21306 62 aa1.73□□□□□ -2.13
SHR3YDL212W SNC2P33328 115 aa1.73□□□□□ -2.13
SHR3YDL212W CAF4P36130 643 aa1.73□□□□□ -2.13
SHR3YDL212W SHG1P38337 142 aa1.73□□□□□ -2.13
SHR3YDL212W MTW1P39731 289 aa1.73□□□□□ -2.13
SHR3YDL212W SNO1Q03144 224 aa1.73□□□□□ -2.13
SHR3YDL212W YET3Q07451 203 aa1.73□□□□□ -2.13
SHR3YDL212W MDM32Q12171 622 aa1.73□□□□□ -2.13
SHR3YDL212W AME1P38313 324 aa1.72□□□□□ -2.13
SHR3YDL212W GAA1P39012 614 aa1.72□□□□□ -2.13
SHR3YDL212W HMF1P40037 129 aaKnown RBP1.72□□□□□ -2.13
SHR3YDL212W YER121WP40076 114 aa1.72□□□□□ -2.13
SHR3YDL212W EAF6P47128 113 aa1.72□□□□□ -2.13
SHR3YDL212W AIM25P47140 327 aa1.72□□□□□ -2.13
SHR3YDL212W YNL247WP53852 767 aaKnown RBP1.72□□□□□ -2.13
SHR3YDL212W RRP17Q04031 235 aaPredicted RBP1.72□□□□□ -2.13
SHR3YDL212W YLR162WQ06235 118 aa1.72□□□□□ -2.13
SHR3YDL212W FLO9P39712 1322 aa1.71□□□□□ -2.14
SHR3YDL212W TAH1P25638 111 aaPredicted RBP1.71□□□□□ -2.14
SHR3YDL212W TRR1P29509 319 aaKnown RBP1.71□□□□□ -2.14
SHR3YDL212W UBC6P33296 250 aaPredicted RBP1.71□□□□□ -2.14
SHR3YDL212W FES1P38260 290 aa1.71□□□□□ -2.14
SHR3YDL212W YDR274CP87283 123 aa1.71□□□□□ -2.14
SHR3YDL212W NUP49Q02199 472 aa1.71□□□□□ -2.14
SHR3YDL212W GRX8Q05926 109 aa1.71□□□□□ -2.14
SHR3YDL212W NOC4Q06512 552 aaPredicted RBP1.71□□□□□ -2.14
SHR3YDL212W CPA1P07258 411 aaKnown RBP1.7□□□□□ -2.14
SHR3YDL212W GCY1P14065 312 aaKnown RBP RIP-Chip data1.7□□□□□ -2.14not detected
SHR3YDL212W TRX3P25372 127 aa1.7□□□□□ -2.14
SHR3YDL212W YBR285WP38354 144 aa1.7□□□□□ -2.14
SHR3YDL212W YGL235WP53071 178 aa1.7□□□□□ -2.14
SHR3YDL212W YNL140CP53910 189 aa1.7□□□□□ -2.14
SHR3YDL212W NRK1P53915 240 aa1.7□□□□□ -2.14
SHR3YDL212W YLR460CP54007 376 aa1.7□□□□□ -2.14
SHR3YDL212W CSI2Q08054 341 aa1.7□□□□□ -2.14
SHR3YDL212W ATG40Q99325 256 aa1.7□□□□□ -2.14
SHR3YDL212W RPS28BP0C0X0 67 aaKnown RBP1.69□□□□□ -2.14
SHR3YDL212W FIG1P38224 298 aa1.69□□□□□ -2.14
SHR3YDL212W TMA22P47089 198 aaPredicted RBP1.69□□□□□ -2.14
SHR3YDL212W RTC4P53850 401 aa1.69□□□□□ -2.14
SHR3YDL212W YLR036CQ07986 203 aa1.69□□□□□ -2.14
SHR3YDL212W RPS28AQ3E7X9 67 aaPredicted RBP1.69□□□□□ -2.14
SHR3YDL212W IGO2Q9P305 131 aa1.69□□□□□ -2.14
SHR3YDL212W MET5P47169 1442 aa1.68□□□□□ -2.14
SHR3YDL212W SIR2P06700 562 aa1.68□□□□□ -2.14
SHR3YDL212W MRS1P07266 363 aa1.68□□□□□ -2.14
SHR3YDL212W CKS1P20486 150 aaKnown RBP1.68□□□□□ -2.14
SHR3YDL212W CNB1P25296 175 aa1.68□□□□□ -2.14
SHR3YDL212W YGL010WP25338 174 aa1.68□□□□□ -2.14
Retrieved 100 of 5,963 RNA–protein pairs in 40.4 ms