RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeastyeast

Gene SHH4, Length 507 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHH4YLR164W TOS1P38288 455 aa12.28□□□□□ -0.44
SHH4YLR164W SET1P38827 1080 aaKnown RBP12.28□□□□□ -0.44
SHH4YLR164W ALD2P47771 506 aa12.28□□□□□ -0.44
SHH4YLR164W FPR3P38911 411 aaKnown RBP12.27□□□□□ -0.45
SHH4YLR164W UBP12P39538 1254 aa12.27□□□□□ -0.45
SHH4YLR164W UTP22P53254 1237 aaPredicted RBP12.27□□□□□ -0.45
SHH4YLR164W GCD7P32502 381 aaPredicted RBP12.26□□□□□ -0.45
SHH4YLR164W PKH1Q03407 766 aa12.26□□□□□ -0.45
SHH4YLR164W ITC1P53125 1264 aa12.25□□□□□ -0.45
SHH4YLR164W GTT3P39996 337 aa12.24□□□□□ -0.45
SHH4YLR164W ALD3P54114 506 aa12.23□□□□□ -0.45
SHH4YLR164W UGA2P38067 497 aa12.22□□□□□ -0.45
SHH4YLR164W PSH1Q12161 406 aa12.22□□□□□ -0.45
SHH4YLR164W SLA1P32790 1244 aa12.21□□□□□ -0.45
SHH4YLR164W HPC2Q01448 625 aa12.19□□□□□ -0.46
SHH4YLR164W SSK22P25390 1331 aaPredicted RBP12.18□□□□□ -0.46
SHH4YLR164W NMD2P38798 1089 aaKnown RBP12.18□□□□□ -0.46
SHH4YLR164W RAT1Q02792 1006 aaKnown RBP12.18□□□□□ -0.46
SHH4YLR164W HAT1Q12341 374 aa12.18□□□□□ -0.46
SHH4YLR164W CAF20P12962 161 aaKnown RBP12.17□□□□□ -0.46
SHH4YLR164W UBP16Q02863 499 aa12.17□□□□□ -0.46
SHH4YLR164W MTC5Q03897 1148 aa12.16□□□□□ -0.46
SHH4YLR164W KTR3P38130 404 aaPredicted RBP12.15□□□□□ -0.46
SHH4YLR164W RPC31P17890 251 aa12.14□□□□□ -0.47
SHH4YLR164W HGH1P48362 394 aaKnown RBP12.14□□□□□ -0.47
SHH4YLR164W NKP2Q06162 153 aa12.14□□□□□ -0.47
SHH4YLR164W BDF2Q07442 638 aa12.14□□□□□ -0.47
SHH4YLR164W SAC3P46674 1301 aa12.13□□□□□ -0.47
SHH4YLR164W PMD1P32634 1753 aa12.13□□□□□ -0.47
SHH4YLR164W RFC1P38630 861 aaKnown RBP12.13□□□□□ -0.47
SHH4YLR164W AI2P03876 854 aa12.12□□□□□ -0.47
SHH4YLR164W EAF6P47128 113 aa12.12□□□□□ -0.47
SHH4YLR164W BDP1P46678 594 aa12.1□□□□□ -0.47
SHH4YLR164W CDC16P09798 840 aa12.09□□□□□ -0.47
SHH4YLR164W SMY1P32364 656 aaKnown RBP12.09□□□□□ -0.47
SHH4YLR164W NOT3P06102 836 aaKnown RBP12.08□□□□□ -0.48
SHH4YLR164W SEC18P18759 758 aaKnown RBP12.08□□□□□ -0.48
SHH4YLR164W FRD1P32614 470 aaKnown RBP12.08□□□□□ -0.48
SHH4YLR164W SSF1P38789 453 aaPredicted RBP12.08□□□□□ -0.48
SHH4YLR164W SYF1Q04048 859 aaPredicted RBP12.08□□□□□ -0.48
SHH4YLR164W DIB1Q06819 143 aaPredicted RBP12.08□□□□□ -0.48
SHH4YLR164W GYP5Q12344 894 aa12.08□□□□□ -0.48
SHH4YLR164W NGR1P32831 672 aaKnown RBP12.07□□□□□ -0.48
SHH4YLR164W ERT1P38140 529 aa12.07□□□□□ -0.48
SHH4YLR164W PFF1P38244 976 aa12.07□□□□□ -0.48
SHH4YLR164W MSN5P52918 1224 aa12.07□□□□□ -0.48
SHH4YLR164W ALO1P54783 526 aaKnown RBP12.07□□□□□ -0.48
SHH4YLR164W SNU66Q12420 587 aaPredicted RBP12.07□□□□□ -0.48
SHH4YLR164W ADR1P07248 1323 aa12.07□□□□□ -0.48
SHH4YLR164W ECM21P38167 1117 aaKnown RBP12.06□□□□□ -0.48
SHH4YLR164W YGL242CP53066 181 aa12.06□□□□□ -0.48
SHH4YLR164W YNL193WP53870 558 aa12.06□□□□□ -0.48
SHH4YLR164W RMD1Q03441 430 aa12.06□□□□□ -0.48
SHH4YLR164W RPN7Q06103 429 aaKnown RBP12.06□□□□□ -0.48
SHH4YLR164W THI3Q07471 609 aa12.06□□□□□ -0.48
SHH4YLR164W MGM1P32266 881 aa12.05□□□□□ -0.48
SHH4YLR164W SPL2P38839 148 aa12.05□□□□□ -0.48
SHH4YLR164W ICP55P40051 511 aa12.05□□□□□ -0.48
SHH4YLR164W CWH41P53008 833 aa12.05□□□□□ -0.48
SHH4YLR164W KIN4Q01919 800 aa12.05□□□□□ -0.48
SHH4YLR164W IRC3Q06683 689 aa12.05□□□□□ -0.48
SHH4YLR164W NCB2Q92317 146 aa12.05□□□□□ -0.48
SHH4YLR164W SUP35P05453 685 aaKnown RBP12.04□□□□□ -0.48
SHH4YLR164W RPN1P38764 993 aaKnown RBP12.04□□□□□ -0.48
SHH4YLR164W PIB2P53191 635 aa12.04□□□□□ -0.48
SHH4YLR164W SIT4P20604 311 aa12.03□□□□□ -0.48
SHH4YLR164W ECM16Q04217 1267 aaKnown RBP12.03□□□□□ -0.48
SHH4YLR164W DPH6Q12429 685 aa12.03□□□□□ -0.48
SHH4YLR164W RAD50P12753 1312 aa12.03□□□□□ -0.48
SHH4YLR164W PDR18P53756 1333 aa12.03□□□□□ -0.48
SHH4YLR164W MRPS35P53292 345 aa12.02□□□□□ -0.49
SHH4YLR164W ERO1Q03103 563 aa12.02□□□□□ -0.49
SHH4YLR164W EPS1P40557 701 aa12.01□□□□□ -0.49
SHH4YLR164W RPT4P53549 437 aaKnown RBP12.01□□□□□ -0.49
SHH4YLR164W POM152P39685 1337 aa12.01□□□□□ -0.49
SHH4YLR164W BRN1P38170 754 aa12□□□□□ -0.49
SHH4YLR164W HAL5P38970 855 aaKnown RBP12□□□□□ -0.49
SHH4YLR164W SET4P42948 560 aa12□□□□□ -0.49
SHH4YLR164W MLC1P53141 149 aa12□□□□□ -0.49
SHH4YLR164W SAS4Q04003 481 aa12□□□□□ -0.49
SHH4YLR164W KRE2P27809 442 aa11.99□□□□□ -0.49
SHH4YLR164W GLO3P38682 493 aaKnown RBP11.99□□□□□ -0.49
SHH4YLR164W DUR1,2P32528 1835 aaKnown RBP11.99□□□□□ -0.49
SHH4YLR164W YKL222CP35995 705 aa11.98□□□□□ -0.49
SHH4YLR164W HXT13P39924 564 aa11.98□□□□□ -0.49
SHH4YLR164W HXT17P53631 564 aa11.98□□□□□ -0.49
SHH4YLR164W SRC1Q03707 834 aa11.98□□□□□ -0.49
SHH4YLR164W CTT1P06115 562 aa11.97□□□□□ -0.49
SHH4YLR164W RET1P22276 1149 aaKnown RBP11.97□□□□□ -0.49
SHH4YLR164W GCR2Q01722 534 aa11.97□□□□□ -0.49
SHH4YLR164W LCB1P25045 558 aaKnown RBP11.96□□□□□ -0.49
SHH4YLR164W IRC4Q03036 179 aa11.96□□□□□ -0.49
SHH4YLR164W FIG2P25653 1609 aa11.96□□□□□ -0.5
SHH4YLR164W VAS1P07806 1104 aaKnown RBP11.95□□□□□ -0.5
SHH4YLR164W DLD1P32891 587 aa11.95□□□□□ -0.5
SHH4YLR164W TOS4Q06266 489 aa11.95□□□□□ -0.5
SHH4YLR164W ICL1P28240 557 aaPredicted RBP11.94□□□□□ -0.5
SHH4YLR164W YIR042CP40586 236 aa11.94□□□□□ -0.5
SHH4YLR164W BRE1Q07457 700 aaKnown RBP11.94□□□□□ -0.5
SHH4YLR164W RIM20Q12033 661 aa11.94□□□□□ -0.5
Retrieved 100 of 5,963 RNA–protein pairs in 32 ms