RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 HNRNPMP52272 730 aaKnown RBP eCLIP7.5□□□□□ -1.21
SCN1A-217ENST00000637988 SENP3-EIF4A1A0A087X0R7 540 aa7.5□□□□□ -1.21
SCN1A-217ENST00000637988 TCERG1O14776 1098 aaKnown RBP7.5□□□□□ -1.21
SCN1A-217ENST00000637988 MIA2Q96PC5 1412 aa7.5□□□□□ -1.21
SCN1A-217ENST00000637988 ROCK1Q13464 1354 aa7.5□□□□□ -1.21
SCN1A-217ENST00000637988 XBP1P17861 261 aa7.5□□□□□ -1.21
SCN1A-217ENST00000637988 PPM1FP49593 454 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-217ENST00000637988 B4GALNT3Q6L9W6 998 aa7.49□□□□□ -1.21
SCN1A-217ENST00000637988 GNL3LQ9NVN8 582 aaKnown RBP7.49□□□□□ -1.21
SCN1A-217ENST00000637988 SUPT16HQ9Y5B9 1047 aaKnown RBP7.49□□□□□ -1.21
SCN1A-217ENST00000637988 ATP6V1DQ9Y5K8 247 aa7.49□□□□□ -1.21
SCN1A-217ENST00000637988 CPLX1O14810 134 aa7.49□□□□□ -1.21
SCN1A-217ENST00000637988 DIAPH3Q9NSV4 1193 aa7.49□□□□□ -1.21
SCN1A-217ENST00000637988 CCDC144AA2RUR9 1427 aa7.49□□□□□ -1.21
SCN1A-217ENST00000637988 SAFBQ15424 915 aaKnown RBP eCLIP7.48□□□□□ -1.21
SCN1A-217ENST00000637988 JPH4Q96JJ6 628 aa7.48□□□□□ -1.21
SCN1A-217ENST00000637988 EIF2S2P20042 333 aaKnown RBP7.48□□□□□ -1.21
SCN1A-217ENST00000637988 MPHOSPH10O00566 681 aaKnown RBP7.48□□□□□ -1.21
SCN1A-217ENST00000637988 PHLDB1Q86UU1 1377 aa7.48□□□□□ -1.21
SCN1A-217ENST00000637988 RBM5P52756 815 aaKnown RBP eCLIP7.48□□□□□ -1.21
SCN1A-217ENST00000637988 TRAK1Q9UPV9 953 aa7.48□□□□□ -1.21
SCN1A-217ENST00000637988 IFIT2P09913 472 aaKnown RBP7.48□□□□□ -1.21
SCN1A-217ENST00000637988 G3BP1Q13283 466 aaKnown RBP eCLIP7.48□□□□□ -1.21
SCN1A-217ENST00000637988 NLRP2Q9NX02 1062 aa7.48□□□□□ -1.21
SCN1A-217ENST00000637988 ZFYVE27Q5T4F4 411 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 PTPRGP23470 1445 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 DESP17661 470 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 RNF20Q5VTR2 975 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 MFAP1P55081 439 aaKnown RBP7.47□□□□□ -1.21
SCN1A-217ENST00000637988 SPRYD3Q8NCJ5 442 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 GOLGA6L19H0YKK7 550 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 FYB1O15117 783 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 PROSER2Q86WR7 435 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-217ENST00000637988 RILPL2Q969X0 211 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 TNIKQ9UKE5 1360 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 MCTP1Q6DN14 999 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 SETQ01105 290 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-217ENST00000637988 STRN4Q9NRL3 753 aa7.47□□□□□ -1.21
SCN1A-217ENST00000637988 RIC3Q7Z5B4 369 aa7.46□□□□□ -1.21
SCN1A-217ENST00000637988 ZKSCAN1P17029 563 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-217ENST00000637988 MAP3K9P80192 1104 aa7.46□□□□□ -1.22
SCN1A-217ENST00000637988 SART3Q15020 963 aaKnown RBP7.46□□□□□ -1.22
SCN1A-217ENST00000637988 TBC1D2BQ9UPU7 963 aa7.46□□□□□ -1.22
SCN1A-217ENST00000637988 SLC4A3P48751 1232 aa7.46□□□□□ -1.22
SCN1A-217ENST00000637988 ZNF710Q8N1W2 664 aa7.45□□□□□ -1.22
SCN1A-217ENST00000637988 TDRD9Q8NDG6 1382 aaKnown RBP7.45□□□□□ -1.22
SCN1A-217ENST00000637988 RRP12Q5JTH9 1297 aaKnown RBP7.45□□□□□ -1.22
SCN1A-217ENST00000637988 DMRT2Q9Y5R5 561 aa7.45□□□□□ -1.22
SCN1A-217ENST00000637988 TTLL12Q14166 644 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-217ENST00000637988 HSP90AB2PQ58FF8 381 aa7.45□□□□□ -1.22
SCN1A-217ENST00000637988 RALYLQ86SE5 291 aaKnown RBP7.45□□□□□ -1.22
SCN1A-217ENST00000637988 VSIG10Q8N0Z9 540 aa7.45□□□□□ -1.22
SCN1A-217ENST00000637988 THEMISQ8N1K5 641 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-217ENST00000637988 MYO6Q9UM54 1294 aa7.44□□□□□ -1.22
SCN1A-217ENST00000637988 TIMELESSQ9UNS1 1208 aa7.44□□□□□ -1.22
SCN1A-217ENST00000637988 SYCP1Q15431 976 aa7.44□□□□□ -1.22
SCN1A-217ENST00000637988 ESCO1Q5FWF5 840 aa7.44□□□□□ -1.22
SCN1A-217ENST00000637988 TMOD2Q9NZR1 351 aa7.44□□□□□ -1.22
SCN1A-217ENST00000637988 CCDC173Q0VFZ6 552 aa7.44□□□□□ -1.22
SCN1A-217ENST00000637988 CDK5RAP3Q96JB5 506 aa7.44□□□□□ -1.22
SCN1A-217ENST00000637988 HSP90AB4PQ58FF6 505 aa7.44□□□□□ -1.22
SCN1A-217ENST00000637988 DHX57Q6P158 1386 aaKnown RBP7.44□□□□□ -1.22
SCN1A-217ENST00000637988 CCDC97Q96F63 343 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-217ENST00000637988 CENPJQ9HC77 1338 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-217ENST00000637988 MINK1Q8N4C8 1332 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-217ENST00000637988 ABTB2Q8N961 1025 aa7.43□□□□□ -1.22
SCN1A-217ENST00000637988 ERC2O15083 957 aa7.43□□□□□ -1.22
SCN1A-217ENST00000637988 PLIN1O60240 522 aa7.43□□□□□ -1.22
SCN1A-217ENST00000637988 GPS2Q13227 327 aa7.43□□□□□ -1.22
SCN1A-217ENST00000637988 RBM42Q9BTD8 480 aaKnown RBP7.43□□□□□ -1.22
SCN1A-217ENST00000637988 BECN2A8MW95 431 aa7.43□□□□□ -1.22
SCN1A-217ENST00000637988 ATP2B2Q01814 1243 aa7.43□□□□□ -1.22
SCN1A-217ENST00000637988 CDR1P51861 262 aa7.42□□□□□ -1.22
SCN1A-217ENST00000637988 ZRSR2Q15696 482 aaKnown RBP7.42□□□□□ -1.22
SCN1A-217ENST00000637988 MPHOSPH9Q99550 1183 aa7.42□□□□□ -1.22
SCN1A-217ENST00000637988 NAP1L1P55209 391 aaKnown RBP7.42□□□□□ -1.22
SCN1A-217ENST00000637988 TOM1L2Q6ZVM7 507 aa7.42□□□□□ -1.22
SCN1A-217ENST00000637988 NOL8Q76FK4 1167 aaKnown RBP7.42□□□□□ -1.22
SCN1A-217ENST00000637988 OFD1O75665 1012 aa7.42□□□□□ -1.22
SCN1A-217ENST00000637988 SLKQ9H2G2 1235 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-217ENST00000637988 DRC1Q96MC2 740 aa7.42□□□□□ -1.22
SCN1A-217ENST00000637988 NEBLO76041 1014 aa7.42□□□□□ -1.22
SCN1A-217ENST00000637988 ARHGAP5Q13017 1502 aa7.42□□□□□ -1.22
SCN1A-217ENST00000637988 TATP17735 454 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-217ENST00000637988 ANKLE2Q86XL3 938 aa7.41□□□□□ -1.22
SCN1A-217ENST00000637988 TXLNAP40222 546 aa7.41□□□□□ -1.22
SCN1A-217ENST00000637988 TNNT3P45378 269 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-217ENST00000637988 ERC1Q8IUD2 1116 aa7.41□□□□□ -1.22
SCN1A-217ENST00000637988 ZNF652Q9Y2D9 606 aa7.41□□□□□ -1.22
SCN1A-217ENST00000637988 MATR3P43243 847 aaKnown RBP eCLIP7.4□□□□□ -1.221e-10■■■■■ 37.8
SCN1A-217ENST00000637988 WASHC4Q2M389 1173 aa7.4□□□□□ -1.22
SCN1A-217ENST00000637988 PLEKHO1Q53GL0 409 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-217ENST00000637988 NEUROD6Q96NK8 337 aa7.4□□□□□ -1.22
SCN1A-217ENST00000637988 NINLQ9Y2I6 1382 aa7.4□□□□□ -1.22
SCN1A-217ENST00000637988 SIN3AQ96ST3 1273 aa7.4□□□□□ -1.22
SCN1A-217ENST00000637988 ANO2Q9NQ90 1003 aa7.4□□□□□ -1.22
SCN1A-217ENST00000637988 RCAN3Q9UKA8 241 aa7.4□□□□□ -1.22
SCN1A-217ENST00000637988 CNNM1Q9NRU3 951 aa7.4□□□□□ -1.22
SCN1A-217ENST00000637988 CHMP5Q9NZZ3 219 aa7.4□□□□□ -1.22
SCN1A-217ENST00000637988 ZPR1O75312 459 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms