RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CDK12Q9NYV4 1490 aaPredicted RBP25.95■■□□□ 1.74
CLN3-264ENST00000637985 CHD2O14647 1828 aaKnown RBP25.95■■□□□ 1.74
CLN3-264ENST00000637985 ADGRB3O60242 1522 aa25.94■■□□□ 1.74
CLN3-264ENST00000637985 LMTK2Q8IWU2 1503 aa25.94■■□□□ 1.74
CLN3-264ENST00000637985 BCANQ96GW7 911 aa25.94■■□□□ 1.74
CLN3-264ENST00000637985 SHPRHQ149N8 1683 aa25.93■■□□□ 1.74
CLN3-264ENST00000637985 NOS1P29475 1434 aa25.93■■□□□ 1.74
CLN3-264ENST00000637985 NCOA3Q9Y6Q9 1424 aa25.93■■□□□ 1.74
CLN3-264ENST00000637985 AHDC1Q5TGY3 1603 aaPredicted RBP25.92■■□□□ 1.74
CLN3-264ENST00000637985 SLC52A1Q9NWF4 448 aa25.9■■□□□ 1.74
CLN3-264ENST00000637985 PLEKHG1Q9ULL1 1385 aa25.89■■□□□ 1.74
CLN3-264ENST00000637985 ABCC5O15440 1437 aa25.88■■□□□ 1.73
CLN3-264ENST00000637985 ZFYVE9O95405 1425 aa25.88■■□□□ 1.73
CLN3-264ENST00000637985 CROCC2H7BZ55 1655 aa25.87■■□□□ 1.73
CLN3-264ENST00000637985 CADPS2Q86UW7 1296 aa25.86■■□□□ 1.73
CLN3-264ENST00000637985 KANK4Q5T7N3 995 aaPredicted RBP25.85■■□□□ 1.73
CLN3-264ENST00000637985 TBX22Q9Y458 520 aa25.85■■□□□ 1.73
CLN3-264ENST00000637985 C14orf37Q86TY3 774 aa25.84■■□□□ 1.73
CLN3-264ENST00000637985 C19orf44Q9H6X5 657 aa25.84■■□□□ 1.73
CLN3-264ENST00000637985 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.83■■□□□ 1.73
CLN3-264ENST00000637985 DIP2AQ14689 1571 aa25.83■■□□□ 1.73
CLN3-264ENST00000637985 NUTM2BA6NNL0 878 aaPredicted RBP25.81■■□□□ 1.72
CLN3-264ENST00000637985 NUTM2EB1AL46 878 aaPredicted RBP25.81■■□□□ 1.72
CLN3-264ENST00000637985 ATF3P18847 181 aa25.81■■□□□ 1.72
CLN3-264ENST00000637985 NUTM2AQ8IVF1 878 aaPredicted RBP25.81■■□□□ 1.72
CLN3-264ENST00000637985 AFF2P51816 1311 aa25.81■■□□□ 1.72
CLN3-264ENST00000637985 HDGFP51858 240 aaKnown RBP25.8■■□□□ 1.72
CLN3-264ENST00000637985 RIMS2Q9UQ26 1411 aa25.8■■□□□ 1.72
CLN3-264ENST00000637985 PPP1R15AO75807 674 aaPredicted RBP25.79■■□□□ 1.72
CLN3-264ENST00000637985 BRINP3Q76B58 766 aa25.78■■□□□ 1.72
CLN3-264ENST00000637985 MYO5BQ9ULV0 1848 aa25.78■■□□□ 1.72
CLN3-264ENST00000637985 RGS12O14924 1447 aa25.77■■□□□ 1.72
CLN3-264ENST00000637985 DAPK1P53355 1430 aa25.77■■□□□ 1.72
CLN3-264ENST00000637985 VPS8Q8N3P4 1428 aa25.77■■□□□ 1.72
CLN3-264ENST00000637985 ADAMTS13Q76LX8 1427 aa25.75■■□□□ 1.71
CLN3-264ENST00000637985 RPRD2Q5VT52 1461 aaKnown RBP25.74■■□□□ 1.71
CLN3-264ENST00000637985 TMEM131LA2VDJ0 1609 aa25.74■■□□□ 1.71
CLN3-264ENST00000637985 SETD5Q9C0A6 1442 aa25.73■■□□□ 1.71
CLN3-264ENST00000637985 PIK3R4Q99570 1358 aa25.73■■□□□ 1.71
CLN3-264ENST00000637985 ANKRD30AQ9BXX3 1397 aa25.73■■□□□ 1.71
CLN3-264ENST00000637985 RBM6P78332 1123 aaKnown RBP25.73■■□□□ 1.71
CLN3-264ENST00000637985 PTPN23Q9H3S7 1636 aa25.73■■□□□ 1.71
CLN3-264ENST00000637985 QTRT2Q9H974 415 aaKnown RBP25.72■■□□□ 1.71
CLN3-264ENST00000637985 GCC2Q8IWJ2 1684 aa25.71■■□□□ 1.71
CLN3-264ENST00000637985 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.7■■□□□ 1.7
CLN3-264ENST00000637985 CHIC2Q9UKJ5 165 aa25.69■■□□□ 1.7
CLN3-264ENST00000637985 ASXL1Q8IXJ9 1541 aa25.68■■□□□ 1.7
CLN3-264ENST00000637985 DCCP43146 1447 aa25.67■■□□□ 1.7
CLN3-264ENST00000637985 NUTM2DQ5VT03 806 aaPredicted RBP25.67■■□□□ 1.7
CLN3-264ENST00000637985 C8orf37Q96NL8 207 aa25.67■■□□□ 1.7
CLN3-264ENST00000637985 LRRC59Q96AG4 307 aaKnown RBP25.66■■□□□ 1.7
CLN3-264ENST00000637985 AMOTL2Q9Y2J4 779 aa25.65■■□□□ 1.7
CLN3-264ENST00000637985 NHSL1Q5SYE7 1610 aa25.64■■□□□ 1.7
CLN3-264ENST00000637985 PTPRUQ92729 1446 aa25.63■■□□□ 1.69
CLN3-264ENST00000637985 ATAD2Q6PL18 1390 aa25.62■■□□□ 1.69
CLN3-264ENST00000637985 MST1RQ04912 1400 aa25.62■■□□□ 1.69
CLN3-264ENST00000637985 NGLY1Q96IV0 654 aa25.61■■□□□ 1.69
CLN3-264ENST00000637985 TRPM2O94759 1503 aa25.61■■□□□ 1.69
CLN3-264ENST00000637985 PNPLA6Q8IY17 1366 aa25.6■■□□□ 1.69
CLN3-264ENST00000637985 CHGAP10645 457 aaKnown RBP25.59■■□□□ 1.69
CLN3-264ENST00000637985 ZRANB1Q9UGI0 708 aa25.59■■□□□ 1.69
CLN3-264ENST00000637985 FOXD1Q16676 465 aa25.58■■□□□ 1.69
CLN3-264ENST00000637985 ADGRL2O95490 1459 aa25.57■■□□□ 1.68
CLN3-264ENST00000637985 DDX17Q92841 729 aaKnown RBP25.55■■□□□ 1.68
CLN3-264ENST00000637985 ANKRD50Q9ULJ7 1429 aa25.54■■□□□ 1.68
CLN3-264ENST00000637985 SETBP1Q9Y6X0 1596 aa25.53■■□□□ 1.68
CLN3-264ENST00000637985 XRN1Q8IZH2 1706 aaKnown RBP25.53■■□□□ 1.68
CLN3-264ENST00000637985 UNC13BO14795 1591 aa25.52■■□□□ 1.68
CLN3-264ENST00000637985 EP400Q96L91 3159 aa25.52■■□□□ 1.68
CLN3-264ENST00000637985 ADAMTS2O95450 1211 aa25.52■■□□□ 1.68
CLN3-264ENST00000637985 LOC105371045A0A1W2PR82 267 aa25.5■■□□□ 1.67
CLN3-264ENST00000637985 USP21Q9UK80 565 aa25.49■■□□□ 1.67
CLN3-264ENST00000637985 TRPC5Q9UL62 973 aaPredicted RBP25.49■■□□□ 1.67
CLN3-264ENST00000637985 E9PCH4 1651 aa25.46■■□□□ 1.67
CLN3-264ENST00000637985 NRXN3Q9Y4C0 1643 aa25.46■■□□□ 1.67
CLN3-264ENST00000637985 CCDC125Q86Z20 511 aa25.46■■□□□ 1.67
CLN3-264ENST00000637985 FNBP4Q8N3X1 1017 aaPredicted RBP25.46■■□□□ 1.67
CLN3-264ENST00000637985 ADGRL3Q9HAR2 1447 aa25.45■■□□□ 1.66
CLN3-264ENST00000637985 LAMC1P11047 1609 aa25.42■■□□□ 1.66
CLN3-264ENST00000637985 ATRNO75882 1429 aa25.42■■□□□ 1.66
CLN3-264ENST00000637985 METP08581 1390 aa25.42■■□□□ 1.66
CLN3-264ENST00000637985 SOS2Q07890 1332 aaPredicted RBP25.4■■□□□ 1.66
CLN3-264ENST00000637985 PTCH1Q13635 1447 aa25.4■■□□□ 1.66
CLN3-264ENST00000637985 C1orf167Q5SNV9 1468 aa25.4■■□□□ 1.66
CLN3-264ENST00000637985 NALCNQ8IZF0 1738 aa25.38■■□□□ 1.65
CLN3-264ENST00000637985 APLP2Q06481 763 aa25.38■■□□□ 1.65
CLN3-264ENST00000637985 IQGAP3Q86VI3 1631 aa25.34■■□□□ 1.65
CLN3-264ENST00000637985 FAM50AQ14320 339 aaKnown RBP25.32■■□□□ 1.64
CLN3-264ENST00000637985 ORAI2Q96SN7 254 aa25.32■■□□□ 1.64
CLN3-264ENST00000637985 COL22A1Q8NFW1 1626 aaPredicted RBP25.32■■□□□ 1.64
CLN3-264ENST00000637985 BCL9LQ86UU0 1499 aa25.32■■□□□ 1.64
CLN3-264ENST00000637985 GJD4Q96KN9 370 aaPredicted RBP25.28■■□□□ 1.64
CLN3-264ENST00000637985 MYOM2P54296 1465 aa25.28■■□□□ 1.64
CLN3-264ENST00000637985 BLMP54132 1417 aaPredicted RBP25.26■■□□□ 1.63
CLN3-264ENST00000637985 ZNF326Q5BKZ1 582 aaKnown RBP25.25■■□□□ 1.63
CLN3-264ENST00000637985 NUP155O75694 1391 aa25.24■■□□□ 1.63
CLN3-264ENST00000637985 LRP5O75197 1615 aa25.23■■□□□ 1.63
CLN3-264ENST00000637985 MARF1Q9Y4F3 1742 aaKnown RBP25.22■■□□□ 1.63
CLN3-264ENST00000637985 DEFB132Q7Z7B7 95 aa25.2■■□□□ 1.62
CLN3-264ENST00000637985 ROCK1Q13464 1354 aa25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms