RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 HTATSF1O43719 755 aaKnown RBP7.05□□□□□ -1.28
SCN1A-216ENST00000637968 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.05□□□□□ -1.28
SCN1A-216ENST00000637968 KCNG1Q9UIX4 513 aa7.05□□□□□ -1.28
SCN1A-216ENST00000637968 CHMP4CQ96CF2 233 aa7.05□□□□□ -1.28
SCN1A-216ENST00000637968 TRHP20396 242 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-216ENST00000637968 GRIPAP1Q4V328 841 aa7.04□□□□□ -1.28
SCN1A-216ENST00000637968 MMP14P50281 582 aa7.04□□□□□ -1.28
SCN1A-216ENST00000637968 RSPH14Q9UHP6 348 aa7.04□□□□□ -1.28
SCN1A-216ENST00000637968 MAPK8IP3Q9UPT6 1336 aa7.04□□□□□ -1.28
SCN1A-216ENST00000637968 NGEFQ8N5V2 710 aa7.04□□□□□ -1.28
SCN1A-216ENST00000637968 PPP1R9BQ96SB3 815 aa7.04□□□□□ -1.28
SCN1A-216ENST00000637968 TOMM22Q9NS69 142 aa7.04□□□□□ -1.28
SCN1A-216ENST00000637968 CEP83Q9Y592 693 aa7.04□□□□□ -1.28
SCN1A-216ENST00000637968 CEP164Q9UPV0 1460 aa7.03□□□□□ -1.28
SCN1A-216ENST00000637968 SETQ01105 290 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-216ENST00000637968 RBM25P49756 843 aaKnown RBP7.03□□□□□ -1.28
SCN1A-216ENST00000637968 CCDC91Q7Z6B0 441 aa7.03□□□□□ -1.28
SCN1A-216ENST00000637968 CREBRFQ8IUR6 639 aa7.03□□□□□ -1.28
SCN1A-216ENST00000637968 HSPA5P11021 654 aaKnown RBP7.03□□□□□ -1.28
SCN1A-216ENST00000637968 TMED8Q6PL24 325 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-216ENST00000637968 RAB3GAP2Q9H2M9 1393 aa7.02□□□□□ -1.28
SCN1A-216ENST00000637968 STAG3Q9UJ98 1225 aa7.02□□□□□ -1.28
SCN1A-216ENST00000637968 VPS8Q8N3P4 1428 aa7.02□□□□□ -1.29
SCN1A-216ENST00000637968 SATB1Q01826 763 aa7.02□□□□□ -1.29
SCN1A-216ENST00000637968 KRT222Q8N1A0 295 aa7.02□□□□□ -1.29
SCN1A-216ENST00000637968 BRMS1Q9HCU9 246 aa7.02□□□□□ -1.29
SCN1A-216ENST00000637968 PLEKHD1A6NEE1 506 aa7.02□□□□□ -1.29
SCN1A-216ENST00000637968 CCDC172P0C7W6 258 aa7.02□□□□□ -1.29
SCN1A-216ENST00000637968 ARID4AP29374 1257 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-216ENST00000637968 PLCB2Q00722 1185 aa7.02□□□□□ -1.29
SCN1A-216ENST00000637968 RNF123Q5XPI4 1314 aa7.02□□□□□ -1.29
SCN1A-216ENST00000637968 NCAPGQ9BPX3 1015 aa7.02□□□□□ -1.29
SCN1A-216ENST00000637968 PAIP2Q9BPZ3 127 aaKnown RBP7.02□□□□□ -1.29
SCN1A-216ENST00000637968 MRVI1Q9Y6F6 885 aa7.01□□□□□ -1.29
SCN1A-216ENST00000637968 MPHOSPH10O00566 681 aaKnown RBP7.01□□□□□ -1.29
SCN1A-216ENST00000637968 U2AF2P26368 475 aaKnown RBP eCLIP7.01□□□□□ -1.291e-6■■■□□ 14.9
SCN1A-216ENST00000637968 ZBTB12Q9Y330 459 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-216ENST00000637968 WDR97A6NE52 1622 aa7.01□□□□□ -1.29
SCN1A-216ENST00000637968 CNTLNQ9NXG0 1405 aa7.01□□□□□ -1.29
SCN1A-216ENST00000637968 CCNB3Q8WWL7 1395 aa7.01□□□□□ -1.29
SCN1A-216ENST00000637968 SYAP1Q96A49 352 aaPredicted RBP7□□□□□ -1.29
SCN1A-216ENST00000637968 CCDC184Q52MB2 194 aa7□□□□□ -1.29
SCN1A-216ENST00000637968 LRCH2Q5VUJ6 765 aa7□□□□□ -1.29
SCN1A-216ENST00000637968 KIF27Q86VH2 1401 aa7□□□□□ -1.29
SCN1A-216ENST00000637968 TSPY4P0CV99 314 aa7□□□□□ -1.29
SCN1A-216ENST00000637968 TSPY10P0CW01 314 aa7□□□□□ -1.29
SCN1A-216ENST00000637968 SRPK2P78362 688 aaKnown RBP7□□□□□ -1.29
SCN1A-216ENST00000637968 TMX1Q9H3N1 280 aa7□□□□□ -1.29
SCN1A-216ENST00000637968 SETD5Q9C0A6 1442 aa7□□□□□ -1.29
SCN1A-216ENST00000637968 H0YHG0 523 aa7□□□□□ -1.29
SCN1A-216ENST00000637968 PLIN1O60240 522 aa7□□□□□ -1.29
SCN1A-216ENST00000637968 SARNPP82979 210 aaKnown RBP7□□□□□ -1.29
SCN1A-216ENST00000637968 ATP2B3Q16720 1220 aa6.99□□□□□ -1.29
SCN1A-216ENST00000637968 ICE2Q659A1 982 aa6.99□□□□□ -1.29
SCN1A-216ENST00000637968 NCAPD3P42695 1498 aa6.99□□□□□ -1.29
SCN1A-216ENST00000637968 GTF2F1P35269 517 aaKnown RBP eCLIP6.99□□□□□ -1.29
SCN1A-216ENST00000637968 NBPF20Q3BBV1 942 aa6.99□□□□□ -1.29
SCN1A-216ENST00000637968 C8orf34Q49A92 452 aa6.99□□□□□ -1.29
SCN1A-216ENST00000637968 FAM43BQ6ZT52 329 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-216ENST00000637968 ZNF853P0CG23 659 aa6.99□□□□□ -1.29
SCN1A-216ENST00000637968 CIZ1Q9ULV3 898 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-216ENST00000637968 NOL10Q9BSC4 688 aaKnown RBP6.99□□□□□ -1.29
SCN1A-216ENST00000637968 TBC1D2Q9BYX2 928 aa6.99□□□□□ -1.29
SCN1A-216ENST00000637968 CADPSQ9ULU8 1353 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 SKAP1Q86WV1 359 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 KNSTRNQ9Y448 316 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 KIF1CO43896 1103 aaKnown RBP6.98□□□□□ -1.29
SCN1A-216ENST00000637968 LIG1P18858 919 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 USP8P40818 1118 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 PSEN1P49768 467 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 MAP2K1Q02750 393 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-216ENST00000637968 C10orf67Q8IYJ2 551 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 TXLNBQ8N3L3 684 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 A0A1B0GUL7 405 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 TPM4P67936 248 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 CASC1Q6TDU7 716 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 DRC1Q96MC2 740 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 PANK3Q9H999 370 aa6.98□□□□□ -1.29
SCN1A-216ENST00000637968 TPM3P06753 285 aa6.97□□□□□ -1.29
SCN1A-216ENST00000637968 TTC31Q49AM3 519 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-216ENST00000637968 TERF2IPQ9NYB0 399 aa6.97□□□□□ -1.29
SCN1A-216ENST00000637968 CAVIN1Q6NZI2 390 aaKnown RBP6.97□□□□□ -1.29
SCN1A-216ENST00000637968 CARD10Q9BWT7 1032 aa6.97□□□□□ -1.29
SCN1A-216ENST00000637968 BCL2L12Q9HB09 334 aa6.97□□□□□ -1.29
SCN1A-216ENST00000637968 SLC52A1Q9NWF4 448 aa6.97□□□□□ -1.29
SCN1A-216ENST00000637968 ANAPC15P60006 121 aa6.97□□□□□ -1.29
SCN1A-216ENST00000637968 AK7Q96M32 723 aa6.97□□□□□ -1.29
SCN1A-216ENST00000637968 GIMAP7Q8NHV1 300 aa6.96□□□□□ -1.29
SCN1A-216ENST00000637968 ATP6V1AP38606 617 aa6.96□□□□□ -1.3
SCN1A-216ENST00000637968 NOLC1Q14978 699 aaKnown RBP eCLIP6.96□□□□□ -1.3
SCN1A-216ENST00000637968 CT47A1Q5JQC4 288 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-216ENST00000637968 EGFL6Q8IUX8 553 aa6.96□□□□□ -1.3
SCN1A-216ENST00000637968 ANKRD20A12PQ8NF67 263 aa6.96□□□□□ -1.3
SCN1A-216ENST00000637968 ZRSR1Q15695 479 aaKnown RBP6.96□□□□□ -1.3
SCN1A-216ENST00000637968 LEKR1Q6ZMV7 388 aa6.96□□□□□ -1.3
SCN1A-216ENST00000637968 TSC1Q92574 1164 aa6.96□□□□□ -1.3
SCN1A-216ENST00000637968 CASQ1P31415 396 aa6.95□□□□□ -1.3
SCN1A-216ENST00000637968 WDR43Q15061 677 aaKnown RBP eCLIP6.95□□□□□ -1.3
SCN1A-216ENST00000637968 CCDC112Q8NEF3 446 aa6.95□□□□□ -1.3
SCN1A-216ENST00000637968 C22orf23Q9BZE7 217 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms